PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PH01000383G0210 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 695aa MW: 76916.5 Da PI: 4.6828 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.3 | 5.1e-52 | 9 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lp GfrFhPtdeel+++yLk k++g+ ++ evi+++d++k+ePwdLp k +++++ ew+fF+++d+ky++g+r+nrat++gyWkatgkd+ + PH01000383G0210 9 LPLGFRFHPTDEELIQHYLKGKITGHIKSEVEVIPDIDVCKCEPWDLPdKsLIRSDDPEWFFFAPKDRKYPNGSRSNRATEAGYWKATGKDRVI 102 699***********************988889***************96446677888************************************ PP NAM 93 lsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 +sk k++++g+kktLvf++grapkge+t W+mheyr+ PH01000383G0210 103 KSKgekrKQHTIGMKKTLVFHRGRAPKGERTGWIMHEYRA 142 **987766677***************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.23E-58 | 3 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.758 | 9 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-27 | 10 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 695 aa Download sequence Send to blast |
MTVMELKALP LGFRFHPTDE ELIQHYLKGK ITGHIKSEVE VIPDIDVCKC EPWDLPDKSL 60 IRSDDPEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR VIKSKGEKRK QHTIGMKKTL 120 VFHRGRAPKG ERTGWIMHEY RATEPEFEFG EQGGYVLYRL FRKQEEKNER SIPEEMDRSG 180 YSPMPSRSTP DNMEAIEEAN TPSNKKSPES ALHESPIDLP GPIETQAAPI TRWLADRTDN 240 LVTNEANISH MPLHGHVDGG AKVVPSVGSL AQLIDPPKKN VDTDEYAATF AAPMLRDEEN 300 AFISEFPQGP IGDFDGNMKD HDPLQDFLNQ TLADPDEHSS TASKNQYDSD TGIMPTEFEN 360 HGIMQGNFLD GPNWLENLNF VPDDTIPQLS ALYENAPLLP YDTTDQDVLS MDSGAESLQE 420 LFNSMEDSSG KRDGWSNEPA LQGTGIAIIP RQLQSAMQPN YLISQQGSAP RRIRLQASFS 480 ANTESGESMT GDEIENEESG IVTSKYLNGA VEESTAEKDV PSDGDDAEST GITIRSRRPA 540 PSSSSDSSFT QQGTAVRRLR LQLNLNAGPC VSVDGSSSCI IDENESEHKA EKAEIEEHAN 600 TDFAERVGLS GNSRVDEQKN THKHDAAKLV PEAKSVLRLR KTAEESAKEN KQEGALDSHL 660 SAPRKKGGFP AYIIWLVLAV ALMLLVCVGI YGWV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-45 | 8 | 164 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-45 | 8 | 164 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-45 | 8 | 164 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-45 | 8 | 164 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-46 | 8 | 164 | 19 | 169 | NAC domain-containing protein 19 |
3swm_B | 9e-46 | 8 | 164 | 19 | 169 | NAC domain-containing protein 19 |
3swm_C | 9e-46 | 8 | 164 | 19 | 169 | NAC domain-containing protein 19 |
3swm_D | 9e-46 | 8 | 164 | 19 | 169 | NAC domain-containing protein 19 |
3swp_A | 9e-46 | 8 | 164 | 19 | 169 | NAC domain-containing protein 19 |
3swp_B | 9e-46 | 8 | 164 | 19 | 169 | NAC domain-containing protein 19 |
3swp_C | 9e-46 | 8 | 164 | 19 | 169 | NAC domain-containing protein 19 |
3swp_D | 9e-46 | 8 | 164 | 19 | 169 | NAC domain-containing protein 19 |
4dul_A | 1e-45 | 8 | 164 | 16 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-45 | 8 | 164 | 16 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PH01000383G0210 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650289.1 | 0.0 | NAC domain-containing protein 14 isoform X2 | ||||
TrEMBL | A0A0A9CTY0 | 0.0 | A0A0A9CTY0_ARUDO; Uncharacterized protein | ||||
STRING | OPUNC08G03310.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5172 | 38 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G33060.1 | 5e-70 | NAC 014 |