PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000382G0290
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 470aa    MW: 51802.3 Da    PI: 4.4029
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000382G0290genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1578e-4961331128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhPtd elv++yLk+k+ gkk  + ++i+ev++yk+ PwdLp k  +++++ ew+fF++rdkky++g+r+nr t +gyWk++gkd+++
  PH01000382G0290   6 LPPGFRFHPTDVELVSYYLKRKIMGKKPLV-QAISEVELYKFAPWDLPdKsYLRSKDLEWFFFCPRDKKYPNGSRTNRGTPNGYWKTSGKDRTI 98 
                      79*************************766.89**************95335566777************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +  +++ vg kktL+f++g+apkg++tdWvm ey++
  PH01000382G0290  99 VL-NSRIVGSKKTLIFHEGKAPKGNRTDWVMYEYKV 133
                      **.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-583156IPR003441NAC domain
PROSITE profilePS5100556.1466156IPR003441NAC domain
PfamPF023654.4E-257132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MAQTCLPPGF RFHPTDVELV SYYLKRKIMG KKPLVQAISE VELYKFAPWD LPDKSYLRSK  60
DLEWFFFCPR DKKYPNGSRT NRGTPNGYWK TSGKDRTIVL NSRIVGSKKT LIFHEGKAPK  120
GNRTDWVMYE YKVEDDDLVS AGFSKDAYVL CKIFKKSGLG PRIGEQYGAP FNEDEWENAD  180
AETSMFSLMS SSELVNSAED PHVQHAGTAR AVDQPPAHHS SVACAQKESS SEYVTATTSV  240
EDLGYVTADC ALQELPSQQS VKSSGDGVVS VHNRSNLVNN VYNPPEIDGI LLEELSRFLN  300
DSPHHDSPVG EHSGLPPMSE AEAQALEVNT CDLYNELAGL AGLGGVSNVD GFCTSNVDIT  360
DHTFQPTYSE LASSDDYIEL NDLFAPGATF SYELPVPSNQ FWQYPLDQST YDGHYDDGAT  420
LSAAFAATDS LPTMPGIVDD LPTVANNGDF ARDFVDTNYP DPTMRYPFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-49215711169Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000382G0290
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660428.10.0NAC domain-containing protein 82
TrEMBLA0A368QI290.0A0A368QI29_SETIT; Uncharacterized protein
STRINGOMERI05G14140.20.0(Oryza meridionalis)
STRINGOS05T0426200-020.0(Oryza sativa)
STRINGONIVA05G17930.10.0(Oryza nivara)
STRINGORGLA05G0148600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47313664
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.47e-80NAC domain containing protein 82