PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000379G0890 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | AP2 | ||||||||
Protein Properties | Length: 387aa MW: 42430.3 Da PI: 9.087 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 40.5 | 6.9e-13 | 55 | 111 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n k+k + g ++ +e Aa+a++ a++k++g PH01000379G0890 55 SVYRGVTRHRWTGRFEAHLWDkNNWNEsqKKKGKQ-GAYDDEEAAARAYDLAALKYWG 111 78*******************65558884446666.99***9**************98 PP | |||||||
2 | AP2 | 52.1 | 1.6e-16 | 154 | 205 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g PH01000379G0890 154 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAMAYDMAAIEYRG 205 89****99**********99966...3.6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.3E-9 | 55 | 111 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-15 | 55 | 121 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-13 | 56 | 121 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.137 | 56 | 119 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-20 | 56 | 125 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.8E-6 | 57 | 68 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.31E-23 | 154 | 215 | No hit | No description |
SuperFamily | SSF54171 | 7.19E-18 | 154 | 215 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.6E-12 | 154 | 205 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.0E-18 | 155 | 214 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.255 | 155 | 213 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.4E-25 | 155 | 219 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.8E-6 | 195 | 215 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0040008 | Biological Process | regulation of growth | ||||
GO:0045723 | Biological Process | positive regulation of fatty acid biosynthetic process | ||||
GO:1901959 | Biological Process | positive regulation of cutin biosynthetic process | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MGRPRKNTTT TNGIGNTGHG NAADASAATT AVAVRAKPKR TRKSVPRESP SQRSSVYRGV 60 TRHRWTGRFE AHLWDKNNWN ESQKKKGKQG AYDDEEAAAR AYDLAALKYW GPDTILNFPL 120 SAYEEELKGM EGQSREEYIG SLRRKSSGFS RGVSKYRGVA RHHHNGRWEA RIGRVFGNKY 180 LYLGTYATQE EAAMAYDMAA IEYRGLNAVT NFNLSRYIKW LRPDGMSAAQ NPRPMLANLA 240 AQELPAIDLD GMASSFLHDR QSMEDSMAAA QFPLSTRTSL GHTPTTSALS LLLQSPKFKE 300 MIERTSAAES STTSSSSLSP PRPPPQATKD DGASPQCSFP EDIQTFFGCE DGAGVGVGLG 360 YTDVDGLFFG DLTAYASPVF HFELDL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000379G0890 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111617 | 0.0 | AK111617.1 Oryza sativa Japonica Group cDNA clone:J013102L16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015696557.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 | ||||
Swissprot | Q94AN4 | 1e-106 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A0D9XDW0 | 0.0 | A0A0D9XDW0_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR09G07570.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3319 | 36 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 1e-100 | ARIA-interacting double AP2 domain protein |
Publications ? help Back to Top | |||
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