PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000374G0830

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

GRAS

Protein Properties

Length: 703aa MW: 78669 Da PI: 6.3657

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000374G0830	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	384.7	1.1e-117	328	695	4	374
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 lL++cA+ v+++d + a++lL++++++a +gd qRla++f+++L+arla+++s++yk+++ ++ + +++l+a++l+ ++P+ k+sh PH01000374G0830 328 LLIHCAQSVATDDRRSATELLKQIRQHAHANGDGDQRLAHCFANGLEARLAGNGSQIYKSFTITRFA---CTDVLKAYQLYLAACPFKKISHYF 418 8***************************************************************9...9******************* PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 a q+I++ave++++vHi+D++i +G+QWp+L+q L++R +gpp+lRiTg++ p++g +e++eetg+ L+++A++++vpfef++ +a+r+e++ PH01000374G0830 419 ASQTIMNAVEKAKKVHIVDYGIYYGFQWPCLIQRLSNRLGGPPKLRITGIDTPQPGfrPAERIEETGRYLSDYAQTFNVPFEFQA-IASRFEAV 511 *********************************************************************************.7*** PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 ++e+L+++++E l+Vn++++ ++l+desv es+r+ L+++++++P+v+++ + ++n++ F++rf eal +ysa+fd+le+++pr++e+r PH01000374G0830 512 RIEDLHIEEDEILIVNCMFKFKTLMDESVVAESPRNMALNTIRKMNPHVFIHGITNGSYNAPFFVTRFREALFHYSAIFDMLETNIPRDNEQRL 605 ****************************************************************************************** PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +E l++re+vnv++ceg er er et+++W+ r ++aGFk++pl+++++k a+ ++ +++d + ++e++ +l++gWk+r L+++S W+ PH01000374G0830 606 LIESTLFSREAVNVISCEGLERMERPETYKQWQVRNQRAGFKQLPLNHDIMKRAREKVKCYHKD-FIIDEDNRWLLQGWKGRILFALSTWK 695 *********************************************************977.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	67.203	299	676	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.7E-115	328	695	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 703 aa Download sequence Send to blast
MAEDIDEKFE HYPGHDALLA AEKPFLEILA DLPPYSGGSA VESADGSSVT NSCNSLSSCN 60 CAAESYGPGA VQTSPVLEFT TAAFLQSPPL CRDLSPESSV VEAGGVWPYD PTEFYQLQTN 120 PVPEALLSQS SSFASSNGSS LTLSKGFESL LSSAGVVRDV GLNDFVVQSQ QAMQFCRGLE 180 EASRFLPDES KLVIDVDKLP SVPSLQAEVK EEKKFVEVKT EKADLEAAIH RGKKHFYGDD 240 LDAEEGRCSK HSASDASAID TDHLVREMMD KVLLCNGETC SKGVKELREA LQNDVAKHSN 300 GEHGKGSRHG KGRGKKQPKK EVVDLEILLI HCAQSVATDD RRSATELLKQ IRQHAHANGD 360 GDQRLAHCFA NGLEARLAGN GSQIYKSFTI TRFACTDVLK AYQLYLAACP FKKISHYFAS 420 QTIMNAVEKA KKVHIVDYGI YYGFQWPCLI QRLSNRLGGP PKLRITGIDT PQPGFRPAER 480 IEETGRYLSD YAQTFNVPFE FQAIASRFEA VRIEDLHIEE DEILIVNCMF KFKTLMDESV 540 VAESPRNMAL NTIRKMNPHV FIHGITNGSY NAPFFVTRFR EALFHYSAIF DMLETNIPRD 600 NEQRLLIEST LFSREAVNVI SCEGLERMER PETYKQWQVR NQRAGFKQLP LNHDIMKRAR 660 EKVKCYHKDF IIDEDNRWLL QGWKGRILFA LSTWKPDHRS SS*

Sequence ? help Back to Top

Protein Sequence Length: 703 aa Download sequence Send to blast

MAEDIDEKFE HYPGHDALLA AEKPFLEILA DLPPYSGGSA VESADGSSVT NSCNSLSSCN  60
CAAESYGPGA VQTSPVLEFT TAAFLQSPPL CRDLSPESSV VEAGGVWPYD PTEFYQLQTN  120
PVPEALLSQS SSFASSNGSS LTLSKGFESL LSSAGVVRDV GLNDFVVQSQ QAMQFCRGLE  180
EASRFLPDES KLVIDVDKLP SVPSLQAEVK EEKKFVEVKT EKADLEAAIH RGKKHFYGDD  240
LDAEEGRCSK HSASDASAID TDHLVREMMD KVLLCNGETC SKGVKELREA LQNDVAKHSN  300
GEHGKGSRHG KGRGKKQPKK EVVDLEILLI HCAQSVATDD RRSATELLKQ IRQHAHANGD  360
GDQRLAHCFA NGLEARLAGN GSQIYKSFTI TRFACTDVLK AYQLYLAACP FKKISHYFAS  420
QTIMNAVEKA KKVHIVDYGI YYGFQWPCLI QRLSNRLGGP PKLRITGIDT PQPGFRPAER  480
IEETGRYLSD YAQTFNVPFE FQAIASRFEA VRIEDLHIEE DEILIVNCMF KFKTLMDESV  540
VAESPRNMAL NTIRKMNPHV FIHGITNGSY NAPFFVTRFR EALFHYSAIF DMLETNIPRD  600
NEQRLLIEST LFSREAVNVI SCEGLERMER PETYKQWQVR NQRAGFKQLP LNHDIMKRAR  660
EKVKCYHKDF IIDEDNRWLL QGWKGRILFA LSTWKPDHRS SS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	5e-51	329	695	8	375	GRAS family transcription factor containing protein, expressed
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000374G0830

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004970541.1	0.0	scarecrow-like protein 9
Swissprot	O80933	1e-177	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A368RD42	0.0	A0A368RD42_SETIT; Uncharacterized protein
STRING	Pavir.Eb03680.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12518	31	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-170	GRAS family protein