PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000370G1230
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family G2-like
Protein Properties Length: 360aa    MW: 38881 Da    PI: 8.504
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000370G1230genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.13.4e-322376255
          G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     prlrWtp+LH++Fv+a+++LGG++kAtPk++++lm+v gLt++hvkSHLQ+YR 
  PH01000370G1230 23 PRLRWTPDLHHCFVHAIHKLGGQDKATPKRVMQLMGVGGLTISHVKSHLQMYRN 76
                     8****************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.8761979IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-311979IPR009057Homeodomain-like
SuperFamilySSF466895.91E-162178IPR009057Homeodomain-like
TIGRFAMsTIGR015575.2E-242376IPR006447Myb domain, plants
PfamPF002498.8E-102475IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGRTMVGRER NGGVRQYNRS KVPRLRWTPD LHHCFVHAIH KLGGQDKATP KRVMQLMGVG  60
GLTISHVKSH LQMYRNMRND IGMQGIQVQQ VDQVHTYGGG MEVCTDMQQC DHHECDVHCC  120
SCHSPNPRKQ ELLLHPQLKR AVVPETETGR EGKEASASPK SLLRGQGICE RDRTSSLYGS  180
LEAAGAYYVH IQMQMQMQMQ TQMQAAMAHV VDPRARGIKQ QQQPREPWPP AGGDGEHAAS  240
KLKFLGFVVT SGPPPACCHD HPFEVGTTVP AHRVAPTASR TDGGRADARL PRRLEPASTV  300
AGRAKPSSPD GEHDGCSLSL SLALALDPAG SGGEGSLLSS SSSSGSRISL DLSLSTLDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-172478357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-172478357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-172478357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-172478357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000370G1230
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0689106e-88BT068910.1 Zea mays full-length cDNA clone ZM_BFc0191L18 mRNA, complete cds.
GenBankHQ8587026e-88HQ858702.1 Zea mays clone UT1158 G2-like transcription factor mRNA, partial cds.
GenBankKJ7268136e-88KJ726813.1 Zea mays clone pUT3230 G2-like transcription factor (GLK48) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880095.11e-106uncharacterized protein LOC4331498 isoform X2
TrEMBLA0A0D9VP351e-107A0A0D9VP35_9ORYZ; Uncharacterized protein
STRINGLPERR03G02180.11e-108(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76102950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.17e-28G2-like family protein