PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000369G0610 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB | ||||||||
Protein Properties | Length: 99aa MW: 11727.7 Da PI: 10.9128 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.8 | 9.3e-17 | 4 | 53 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd +l +v+q+G++ W+++a++m+ + R +k+c +rw +yl PH01000369G0610 4 RQRWRPEEDAILRAYVRQYGPREWNLVAQRMNvaLDRDAKSCLERWKNYL 53 89**********************************************97 PP | |||||||
2 | Myb_DNA-binding | 25.5 | 3e-08 | 59 | 88 | 1 | 31 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartm 31 +g+ T+eE+ l +++ +++G++ Wk+Ia+++ PH01000369G0610 59 KGSLTEEEQRLVIRLQAKHGNK-WKKIAAEV 88 6788******************.*****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.657 | 1 | 57 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-18 | 2 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.1E-13 | 3 | 55 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.21E-21 | 4 | 87 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.34E-9 | 6 | 53 | No hit | No description |
Pfam | PF13921 | 2.5E-15 | 7 | 67 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-12 | 57 | 88 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.607 | 58 | 98 | IPR017930 | Myb domain |
SMART | SM00717 | 0.21 | 58 | 97 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00181 | 63 | 88 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 99 aa Download sequence Send to blast |
MKERQRWRPE EDAILRAYVR QYGPREWNLV AQRMNVALDR DAKSCLERWK NYLRPGIKKG 60 SLTEEEQRLV IRLQAKHGNK WKKIAAEVIR NVMVLLPS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-14 | 7 | 85 | 7 | 82 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-14 | 7 | 85 | 7 | 82 | C-Myb DNA-Binding Domain |
1msf_C | 1e-14 | 7 | 85 | 7 | 82 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for normal cell differentiation. Interacts directly with asymmetric leaves 2 (AS2) to repress the knox homeobox genes. {ECO:0000269|PubMed:10102816, ECO:0000269|PubMed:12750468, ECO:0000269|PubMed:9655808}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000369G0610 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF126489 | 3e-93 | AF126489.1 Zea mays rough sheath2 protein (rs2) gene, complete cds. | |||
GenBank | AF143447 | 3e-93 | AF143447.1 Zea mays rough sheath 2 (rs2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001105509.1 | 7e-54 | protein rough sheath 2 | ||||
Swissprot | Q9S7B2 | 6e-55 | RS2_MAIZE; Protein rough sheath 2 | ||||
TrEMBL | A0A1E5V7B3 | 3e-54 | A0A1E5V7B3_9POAL; Protein rough sheath 2 (Fragment) | ||||
STRING | Pavir.Cb00486.1.p | 2e-54 | (Panicum virgatum) | ||||
STRING | TRIUR3_13997-P1 | 4e-54 | (Triticum urartu) | ||||
STRING | GRMZM2G403620_P01 | 3e-53 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5190 | 36 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37630.1 | 1e-50 | MYB family protein |