PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000359G0870
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 738aa    MW: 77136.9 Da    PI: 9.7734
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000359G0870genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14.1e-08202246244
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 
                      ++W++eEd  l+ +v++ G g+W  I  +    ++Rt+ q+  rw
  PH01000359G0870 202 KPWSKEEDAELAAGVQKCGEGNWLDILYKCSfdNTRTPVQLSQRW 246
                      68******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.984196254IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-11196253IPR009057Homeodomain-like
SuperFamilySSF466899.72E-13199252IPR009057Homeodomain-like
SMARTSM007174.8E-7200252IPR001005SANT/Myb domain
PfamPF002491.9E-6202246IPR001005SANT/Myb domain
CDDcd116601.78E-16204251No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    Send to blast
MAAPAVGTGK RKRKRGFSED DVYLLLHRYT PSTILTALQE VAQHAERDID WRSLVGKTAT  60
GITSAREYQM LWRHCAYRHD LAENVDDGAQ PLGDESDLEC EVEPVPTPSN EALVEASTFA  120
KILISGSSRE QASSHRIHSE APVLNTPNEK ILRVPSDKQL AQSHRLTNGT SPVSNSKQAS  180
HTGLSPDPLD ANGPPKKKKK PKPWSKEEDA ELAAGVQKCG EGNWLDILYK CSFDNTRTPV  240
QLSQRWALIC KRQGTTKPAN TKPVSVASSE ERKAAQKAFS MALGMPMTGL SMLRSGALQQ  300
SIQHPSPVFG TMTPEVKSAT APSSLPVPVP VPMPVAVPVP VPVQVQLPLS QVQQAPAQAA  360
PLKVSNTSIS QVLQAPAQAA PLKVSNTSNK SRNNSKKQAA QPNPTNGPSS IQAAAIAAGG  420
RIATPSVATN LLKAAQSTKA VHIRSRGTGS SKSSTSSKAS TMAGEPGAQL GSAQHPEPPN  480
TSAPASSPSV LTTHASEQVH DVSEVAGVNP PGLSAGMHLS ETKRTLSTTP MSAPCNNVDK  540
DDDSTFCVVT MEDLFPEEAK QPDIVDPKAE EIIDPKDADM IEFDRFVAQG CLNMDYLDKS  600
KTVKIAPGAQ DVGSQKKQPK PLSAAGKSNP VSAGAPATGK KTKTPVPHGA TSMKTGTSSG  660
VVGTGNASVQ DKAVGGKAAA PATTGSQNTV QKHHIAISKG NGMPKSAALG TGTPANIQGN  720
PVVNGARQGN PPARQCQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194200PKKKKKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000359G0870
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572605.10.0uncharacterized protein LOC100823787
TrEMBLI1IAE30.0I1IAE3_BRADI; Uncharacterized protein
STRINGBRADI3G45450.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46843754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.13e-48MYB_related family protein