PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000358G0570
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 557aa    MW: 62925.9 Da    PI: 9.1081
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000358G0570genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM113.13e-35642061128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...... 77 
                      lp+G++F+Ptd+el+ e+L++kv+++       +   +    +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+      
  PH01000358G0570  64 LPAGVKFDPTDQELI-EHLEAKVREEGsrshplV---DefipTIEGEdGICYTHPEKLP-GVTRDGLSKHFFHRPSKAYTTGTRKRRKiqtecd 152
                      799************.99******9996675442...133323666646**********.555666799******************7566666 PP

              NAM  78 ..tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                          + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  PH01000358G0570 153 vqKGETRWHKTGKTRPVMV-NGRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 206
                      4433778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-3954225IPR003441NAC domain
PROSITE profilePS5100534.32464225IPR003441NAC domain
PfamPF023655.2E-1665206IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MNRGHISSSE LIDAKLEEHR ISTAKHCPSC GHKLDCKPLG MRVLGATPFY GINWCNCKKD  60
WVGLPAGVKF DPTDQELIEH LEAKVREEGS RSHPLVDEFI PTIEGEDGIC YTHPEKLPGV  120
TRDGLSKHFF HRPSKAYTTG TRKRRKIQTE CDVQKGETRW HKTGKTRPVM VNGRQKGCKK  180
ILVLYTNFGK HRKPEKTNWV MHQYHLGDLE EEKEGELVVC KIFYQTQPRQ CSWSSDRGAA  240
AVTATVQEQR GRDSGSGSCS SRDHEVSATS YPAGYAAVEM QHLKQSADHF SFAPFRKSFD  300
QEVIGGDQVP SDQLGRSEQH HAGQEQQPHR PVLARTAVPA TAFLISRPTN PVPTIVPPAM  360
QHASVVLDHD QFHNVPAILL HHDKFQHQHQ QQQQKHDRIS AGWEELIMGC TSTSTRGVRK  420
LQIVSYRRGE GLEKKDTSVK LQFLTPKRQN GLTHAGLLTT RIIMDSINKA EFIPAFIESK  480
ITKSKQPRTK QPHRWGDQLT ISAQNTQQPE QGTTPFKRDL NKEIQTEQTE QTSSTSSKEN  540
DKEHLNRLRQ TDVTPE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-126220613140Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000358G0570
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0170050.0KM017005.1 UNVERIFIED: Miscanthus lutarioriparius NAC7-like mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688172.10.0PREDICTED: protein ATAF2 isoform X1
RefseqXP_015688173.10.0PREDICTED: protein ATAF2 isoform X1
RefseqXP_015688174.10.0PREDICTED: protein ATAF2 isoform X1
RefseqXP_015688175.10.0PREDICTED: protein ATAF2 isoform X1
RefseqXP_015688176.10.0PREDICTED: protein ATAF2 isoform X1
RefseqXP_015688177.10.0PREDICTED: protein ATAF2 isoform X1
TrEMBLA0A3L6FIT60.0A0A3L6FIT6_MAIZE; NAC domain-containing protein 73
STRINGOGLUM01G06390.10.0(Oryza glumipatula)
STRINGORUFI01G06380.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-116NAC domain containing protein 75