PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000355G0090
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 347aa    MW: 37160.5 Da    PI: 8.0891
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000355G0090genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.1e-20174223255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++a+ +l+g
  PH01000355G0090 174 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEDAALAYDKAAFRLRG 223
                      59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.57E-32173231No hitNo description
SMARTSM003809.6E-38174237IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-32174232IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-22174231IPR016177DNA-binding domain
PROSITE profilePS5103223.077174231IPR001471AP2/ERF domain
PfamPF008472.0E-13175223IPR001471AP2/ERF domain
PRINTSPR003676.0E-11175186IPR001471AP2/ERF domain
PRINTSPR003676.0E-11197213IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MAAAIDMYKY NTSTHQIASS ASDQELMKVL GPFIRSAAAS SSSSSPSPSP YYSSSMTHDS  60
YMHTPTSYTS LTTLPLPTTT TTTATTSSSF SQLPPLYSSQ YAASAASAMT GSIGLTHLGP  120
AQIQQIQAQF LVQQRQQQQQ QRGLPGAFLG PRAQTMKQFG SPPRAAAVAA QSKLYRGVRQ  180
RHWGKWVAEI RLPKNRTRLW LGTFDTAEDA ALAYDKAAFR LRGDLARLNF PSLRRGGAHL  240
AGPLHASVDA KLTAICQSLA APSSKNAAAT AAESAASAAE PESPKCSSST EGEESVSAGS  300
PPPPTSLAPP VPEMERLDFT EAPWDESETF HLCKYPSWEI DWDSILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-22170231163ATERF1
3gcc_A9e-22170231163ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000355G0090
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1015980.0FP101598.1 Phyllostachys edulis cDNA clone: bphylf056m08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155853.11e-149ethylene-responsive transcription factor RAP2-4-like
TrEMBLA0A446WKK71e-153A0A446WKK7_TRITD; Uncharacterized protein
TrEMBLA7XA611e-153A7XA61_WHEAT; DRF-like transcription factor DRFL2a
STRINGGRMZM2G029323_P011e-143(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.17e-45related to AP2 4