|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
PH01000353G0190 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
Family |
BBR-BPC |
Protein Properties |
Length: 337aa MW: 36976 Da PI: 10.3507 |
Description |
BBR-BPC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PH01000353G0190 | genome | ICBR | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GAGA_bind | 362.4 | 8.8e-111 | 1 | 337 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssia.erdaki..........rernlalsekkaavaerd..................maflqrd 64
mdddgs + rn+g+ye k nlglqlmss+a +rd+k+ + ++ a +++++ +++rd m+f+++d
PH01000353G0190 1 MDDDGSLSiRNWGFYETV---KGNLGLQLMSSVAaDRDTKPllpngtflqhHGHHNAPHHPQHLHHPRDcggggasggmpteppsvhMDFVRND 91
9**************988...***********999**************9888888999*********************************** PP
GAGA_bind 65 kalae.....rnkalverdnkllalllvensla...........salpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaae 142
++++ ++++ ++r++k+l+ l+v + +++p+g++v+++++ +++lq+ ++++ + ++ e+ +p++e+++
PH01000353G0190 92 TWMHPsqhqhQHQHQHPREQKVLHALPVGPAGHighpghgghavHHHPTGYGVMPDAHGAHTLQM-----MQPQEPPPPK-EERMPPPLVEEHS 179
***986555556778999********9998877899999**9999*******************9.....4444444334.4456778888889 PP
GAGA_bind 143 eakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCt 236
++++++ +kkrq++++pk++k kk+kk ++++++ ++++ +r + +kk +++v+ng++lD s++P+PvCsCtGa++qCY+WG+GGWqSaCCt
PH01000353G0190 180 VVRNEPPMKKRQQGRQPKSSKPKKPKK-VAAPREDGTPNGPAPRGRGPKKPVGMVINGIDLDLSRIPTPVCSCTGAPQQCYRWGAGGWQSACCT 272
9999999999*****************.67888999999988**************************************************** PP
GAGA_bind 237 ttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
t+iS+yPLP+stkrrgaRiagrKmSqgafkk+LekLa+eGy+l+np+DLk++WAkHGtnkfvtir
PH01000353G0190 273 TSISTYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTIR 337
****************************************************************8 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 337 aa
Download sequence Send
to blast |
MDDDGSLSIR NWGFYETVKG NLGLQLMSSV AADRDTKPLL PNGTFLQHHG HHNAPHHPQH 60 LHHPRDCGGG GASGGMPTEP PSVHMDFVRN DTWMHPSQHQ HQHQHQHPRE QKVLHALPVG 120 PAGHIGHPGH GGHAVHHHPT GYGVMPDAHG AHTLQMMQPQ EPPPPKEERM PPPLVEEHSV 180 VRNEPPMKKR QQGRQPKSSK PKKPKKVAAP REDGTPNGPA PRGRGPKKPV GMVINGIDLD 240 LSRIPTPVCS CTGAPQQCYR WGAGGWQSAC CTTSISTYPL PMSTKRRGAR IAGRKMSQGA 300 FKKVLEKLAG EGYNLNNPID LKTFWAKHGT NKFVTIR
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | FP098331 | 0.0 | FP098331.1 Phyllostachys edulis cDNA clone: bphylf058a01, full insert sequence. |