PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000353G0190
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family BBR-BPC
Protein Properties Length: 337aa    MW: 36976 Da    PI: 10.3507
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000353G0190genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind362.48.8e-11113371301
        GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlmssia.erdaki..........rernlalsekkaavaerd..................maflqrd 64 
                      mdddgs + rn+g+ye     k nlglqlmss+a +rd+k+          + ++ a +++++ +++rd                  m+f+++d
  PH01000353G0190   1 MDDDGSLSiRNWGFYETV---KGNLGLQLMSSVAaDRDTKPllpngtflqhHGHHNAPHHPQHLHHPRDcggggasggmpteppsvhMDFVRND 91 
                      9**************988...***********999**************9888888999*********************************** PP

        GAGA_bind  65 kalae.....rnkalverdnkllalllvensla...........salpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaae 142
                      ++++      ++++ ++r++k+l+ l+v  +             +++p+g++v+++++ +++lq+     ++++  + ++ e+   +p++e+++
  PH01000353G0190  92 TWMHPsqhqhQHQHQHPREQKVLHALPVGPAGHighpghgghavHHHPTGYGVMPDAHGAHTLQM-----MQPQEPPPPK-EERMPPPLVEEHS 179
                      ***986555556778999********9998877899999**9999*******************9.....4444444334.4456778888889 PP

        GAGA_bind 143 eakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCt 236
                      ++++++ +kkrq++++pk++k kk+kk  ++++++ ++++  +r + +kk +++v+ng++lD s++P+PvCsCtGa++qCY+WG+GGWqSaCCt
  PH01000353G0190 180 VVRNEPPMKKRQQGRQPKSSKPKKPKK-VAAPREDGTPNGPAPRGRGPKKPVGMVINGIDLDLSRIPTPVCSCTGAPQQCYRWGAGGWQSACCT 272
                      9999999999*****************.67888999999988**************************************************** PP

        GAGA_bind 237 ttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                      t+iS+yPLP+stkrrgaRiagrKmSqgafkk+LekLa+eGy+l+np+DLk++WAkHGtnkfvtir
  PH01000353G0190 273 TSISTYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTIR 337
                      ****************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.8E-1891337IPR010409GAGA-binding transcriptional activator
PfamPF062179.8E-1221337IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MDDDGSLSIR NWGFYETVKG NLGLQLMSSV AADRDTKPLL PNGTFLQHHG HHNAPHHPQH  60
LHHPRDCGGG GASGGMPTEP PSVHMDFVRN DTWMHPSQHQ HQHQHQHPRE QKVLHALPVG  120
PAGHIGHPGH GGHAVHHHPT GYGVMPDAHG AHTLQMMQPQ EPPPPKEERM PPPLVEEHSV  180
VRNEPPMKKR QQGRQPKSSK PKKPKKVAAP REDGTPNGPA PRGRGPKKPV GMVINGIDLD  240
LSRIPTPVCS CTGAPQQCYR WGAGGWQSAC CTTSISTYPL PMSTKRRGAR IAGRKMSQGA  300
FKKVLEKLAG EGYNLNNPID LKTFWAKHGT NKFVTIR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200206PKKPKKV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000353G0190
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0983310.0FP098331.1 Phyllostachys edulis cDNA clone: bphylf058a01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802067.11e-168protein Barley B recombinant-like
SwissprotQ8GUC31e-171BBR_HORVU; Protein Barley B recombinant
TrEMBLA0A1E5V7481e-172A0A1E5V748_9POAL; Protein Barley B recombinant (Fragment)
STRINGTraes_4AS_48979CBE1.21e-171(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.32e-60basic pentacysteine 2