PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000352G0610
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 373aa    MW: 40613.5 Da    PI: 7.0685
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000352G0610genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.57.7e-51111391128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                      +ppGfrFhPt+eel+++yLkkkv++++++l +vi++vd++k+ePwd+++  ++ +  +++wy Fs++dkky+tg+r+nrat++g+Wkatg+dk+
  PH01000352G0610  11 VPPGFRFHPTEEELLTYYLKKKVASERIDL-DVIRDVDLNKLEPWDIQElcRIGSgPQNDWYIFSHKDKKYPTGTRTNRATAAGFWKATGRDKA 103
                      69****************************.9***************954555552456*********************************** PP

              NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ + + +g++ktLvfykgrap+g+k+dW+mheyrl
  PH01000352G0610 104 IYT-SFKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 139
                      ***.8889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-557183IPR003441NAC domain
PROSITE profilePS5100554.27311183IPR003441NAC domain
PfamPF023656.6E-2712139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MSISVNGQSV VPPGFRFHPT EEELLTYYLK KKVASERIDL DVIRDVDLNK LEPWDIQELC  60
RIGSGPQNDW YIFSHKDKKY PTGTRTNRAT AAGFWKATGR DKAIYTSFKR IGMRKTLVFY  120
KGRAPHGQKS DWIMHEYRLD DMHPAADPSN HPYYSSGSSP MRGAAGDQAA QEEGWVICRV  180
FKKKNLAHHG QSSGAANVTS HSAAKLVAAM ESSPSNCSSV TVSDHVKAQM LHFASDDALD  240
QIVQYMGRSC KQETGPAALD HLTPTTTACP NSLYGKFMKL PPLEHVAGGG LLPNPAQYAA  300
AADSPGIADW DTLDRLAAYE LNGLSDASKN MASFFDETNA AFSSVHGAGD GDLWSLARSV  360
SSLHADLTMN NA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-45818814170NO APICAL MERISTEM PROTEIN
1ut4_B2e-45818814170NO APICAL MERISTEM PROTEIN
1ut7_A2e-45818814170NO APICAL MERISTEM PROTEIN
1ut7_B2e-45818814170NO APICAL MERISTEM PROTEIN
3swm_A2e-45818817173NAC domain-containing protein 19
3swm_B2e-45818817173NAC domain-containing protein 19
3swm_C2e-45818817173NAC domain-containing protein 19
3swm_D2e-45818817173NAC domain-containing protein 19
3swp_A2e-45818817173NAC domain-containing protein 19
3swp_B2e-45818817173NAC domain-containing protein 19
3swp_C2e-45818817173NAC domain-containing protein 19
3swp_D2e-45818817173NAC domain-containing protein 19
4dul_A2e-45818814170NAC domain-containing protein 19
4dul_B2e-45818814170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000352G0610
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8331241e-161CT833124.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA241M20, full insert sequence.
GenBankCT8331251e-161CT833125.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI245A08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655752.10.0PREDICTED: NAC domain-containing protein 43-like
SwissprotQ84WP61e-109NAC43_ARATH; NAC domain-containing protein 43
TrEMBLA0A1E5VDB90.0A0A1E5VDB9_9POAL; NAC domain-containing protein 43
STRINGOB06G11970.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP159738112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.12e-95NAC family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gondolf VM, et al.
    A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis.
    BMC Plant Biol., 2014. 14: p. 344
    [PMID:25492673]
  3. Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ
    A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons.
    GM Crops Food, 2014. 5(4): p. 302-20
    [PMID:25523176]
  4. Yuan Y,Teng Q,Zhong R,Ye ZH
    TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
    Plant Cell Physiol., 2016. 57(1): p. 35-45
    [PMID:26556650]
  5. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  6. Pascual MB, et al.
    PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
    Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
    [PMID:29055073]
  7. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]