PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000352G0060
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family BBR-BPC
Protein Properties Length: 380aa    MW: 42043.9 Da    PI: 10.3174
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000352G0060genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind400.81.8e-122513791301
        GAGA_bind   1 mdddgsre..rnkg.yye........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnklla 83 
                      md+ g+re  r+++ +y+        p+++lk++ +++l+++++erd++irer++al+ekkaa+aerdmaf+qrd+a+aern+a+verdn+l+a
  PH01000352G0060  51 MDNLGHREngRQRPdQYKavhtqwmmPQRQLKDHHSMNLLALMNERDSAIRERDHALAEKKAAIAERDMAFAQRDAAMAERNAAVVERDNALAA 144
                      9999*99999****99*99****999889***************************************************************** PP

        GAGA_bind  84 lllvensla...salpvgvqvlsgtksidslqqlse.....pqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkak..k 166
                      l+l++++     + + + +++lsg+k+i++++qls+      ql+ds+++ +re+++lea+p+++a+ ++ ++k++kk++ +++p+++ +   +
  PH01000352G0060 145 LELARTNGLnvnNGNEFPQGSLSGAKNIHHHDQLSHvqsspLQLADSPYDhVREMHILEAYPVSTAPGNIGKAKRPKKNNGQASPLKRPSGvlR 238
                      *999887765667788999**************999999999********9*************************************999887 PP

        GAGA_bind 167 kkkksekskkkvkkesader......skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaR 254
                      k+kk ++++k+v +++  e+      +k+e+k++dl+ln+v++Dest+P+P+CsCtG+lrqCYkWGnGGWqS+CCt++iS+yPLPv++++r+aR
  PH01000352G0060 239 KTKKATSDWKNVGMSGGGEDsgrvsvMKNEWKDQDLGLNQVAFDESTMPAPACSCTGKLRQCYKWGNGGWQSSCCTMSISMYPLPVMPNKRHAR 332
                      77778899999999987744688999******************************************************************** PP

        GAGA_bind 255 iagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                      ++grKmS+gaf+klL++LaaeG+dls+pvDLkdhWAkHGtn+++tir
  PH01000352G0060 333 MGGRKMSGGAFTKLLSRLAAEGHDLSTPVDLKDHWAKHGTNRYITIR 379
                      **********************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062171.0E-9751379IPR010409GAGA-binding transcriptional activator
SMARTSM012261.9E-17051379IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MATITFTPPM AATIVSPSLS LSHILRLKKN QAWRGDFIVA LFSWLQANVI MDNLGHRENG  60
RQRPDQYKAV HTQWMMPQRQ LKDHHSMNLL ALMNERDSAI RERDHALAEK KAAIAERDMA  120
FAQRDAAMAE RNAAVVERDN ALAALELART NGLNVNNGNE FPQGSLSGAK NIHHHDQLSH  180
VQSSPLQLAD SPYDHVREMH ILEAYPVSTA PGNIGKAKRP KKNNGQASPL KRPSGVLRKT  240
KKATSDWKNV GMSGGGEDSG RVSVMKNEWK DQDLGLNQVA FDESTMPAPA CSCTGKLRQC  300
YKWGNGGWQS SCCTMSISMY PLPVMPNKRH ARMGGRKMSG GAFTKLLSRL AAEGHDLSTP  360
VDLKDHWAKH GTNRYITIR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000352G0060
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655749.10.0PREDICTED: barley B recombinant-like protein D
RefseqXP_015693740.10.0PREDICTED: barley B recombinant-like protein D
SwissprotQ5VSA80.0BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBLA0A3L6DC170.0A0A3L6DC17_MAIZE; Barley B recombinant-like protein D
TrEMBLJ3MAZ10.0J3MAZ1_ORYBR; Uncharacterized protein
STRINGOB06G11850.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62263756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-102basic pentacysteine 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]