PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000343G0830
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 218aa    MW: 22895.5 Da    PI: 5.6396
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000343G0830genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-1852101255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  PH01000343G0830  52 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAALAIKG 101
                      69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.2E-3752115IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2252110IPR016177DNA-binding domain
PROSITE profilePS5103222.99852109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-3252110IPR001471AP2/ERF domain
PfamPF008471.8E-1252101IPR001471AP2/ERF domain
PRINTSPR003679.3E-115364IPR001471AP2/ERF domain
CDDcd000182.46E-3153111No hitNo description
PRINTSPR003679.3E-117591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MGAMDDCSSG SEPTTSSSVE APASPPSPTA ATASSSDAAK KKRPRKDGHH PTYRGVRMRS  60
WGKWVSEIRE PRKKSRIWLG TFATAEMAAR AHDVAALAIK GRAAHLNFPD LAHELPRPAT  120
SAPKDVQAAA ALAAAADLPT YANAGVKNPD PSDASAGSAS PPPDTADEAL FDLPDLLLDL  180
RYGPPSCQLS CASSWDDDVA FTGAGVFRLE EPLLWEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-18501091272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000343G0830
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194841.11e-99ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ74e-52ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLQ3T5P21e-107Q3T5P2_HORVV; HvCBF7
STRINGMLOC_3095.11e-108(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-44ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]