PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000343G0780
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 262aa    MW: 27769.9 Da    PI: 6.7847
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000343G0780genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83e-1987137155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + y+GVr+++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  PH01000343G0780  87 PSYRGVRRRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 137
                      57*****887.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-1387137IPR001471AP2/ERF domain
CDDcd000182.25E-3087147No hitNo description
Gene3DG3DSA:3.30.730.101.9E-3288146IPR001471AP2/ERF domain
SMARTSM003806.9E-3888151IPR001471AP2/ERF domain
PROSITE profilePS5103224.03988145IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2288146IPR016177DNA-binding domain
PRINTSPR003675.7E-1189100IPR001471AP2/ERF domain
PRINTSPR003675.7E-11111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEADAIHAPT TSSDSDSRVI DGAQELSKNS KPNHLKRKRT TTPAPAPSSQ KATAEATDGK  60
RGEESSSCTA VDAHTASQKM GRACRHPSYR GVRRRSWGKW VSEIREPRKK SRIWLGTFPT  120
AEMAARAHDV AALAIKGRGA HLNFPHLAHA LPRPASASPA DIQAAAAMAA ADQCKSSSSV  180
AETTETSSAA SSGMAGSGER ENSLFDLPDL LLDLRDGLWC SPIWTAAAAD EYDCGDAAAL  240
HEPILWAEQC WMDASAPVQP D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1981146773Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000343G0780
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3559757e-90AK355975.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1028H04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194839.13e-83ethylene-responsive transcription factor ERF038-like
SwissprotQ8LBQ71e-48ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A287E3508e-85A0A287E350_HORVV; Uncharacterized protein
STRINGMLOC_75601.14e-89(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.19e-38ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]