PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000336G0690
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 744aa    MW: 81605.9 Da    PI: 7.2246
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000336G0690genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.53.5e-2190145156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      r++ +++t++q++++e++F+++++p++++r++L+k+lgL+ rqVk+WFqNrR++ k
  PH01000336G0690  90 RKNYHRHTADQIRVMEAVFKESPHPDEKQRQQLSKQLGLSARQVKFWFQNRRTQIK 145
                      788999**********************************************9877 PP
2START192.91.6e-602594862206
                      HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
            START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                      l+ +a++el ++ +++ep+Wv+ +    +++n+de+++ f +++         s+ea r++gvv  ++++lv  ++d++ qW+  ++    ka+
  PH01000336G0690 259 LSGRALDELTTMCSSGEPLWVRTVetgqDILNYDEYVRLFRRDDDpgdqragWSVEATREIGVVYLDTMQLVHAFMDVN-QWKDIFPsmisKAA 351
                      67899***********************************998889999*999**************************.************** PP

                      EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--...-TTSEE-EESSEEEEEEEECTCEEEEE CS
            START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe..sssvvRaellpSgiliepksnghskvt 165
                      tl+vi++g      g++qlm+ae q+l+p+vp R+f+f+Ry+r+l+a++w+ivdvS d  +  p    ss+vR+ + pSg++ie+  ngh+kvt
  PH01000336G0690 352 TLDVIQTGendsrdGVVQLMFAEQQMLTPMVPtREFYFARYCRKLTAERWAIVDVSFDMGKVEPDvhASSLVRCWKNPSGCIIEEQTNGHCKVT 445
                      ***********************************************************999999999************************** PP

                      EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      wveh+ ++++++++++r    sgla+ga++wvatlq qce+
  PH01000336G0690 446 WVEHTRCRKSTVPSMYRTATTSGLAFGARRWVATLQLQCER 486
                      ***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.0E-2375141IPR009057Homeodomain-like
SuperFamilySSF466892.21E-2075148IPR009057Homeodomain-like
PROSITE profilePS5007117.89687147IPR001356Homeobox domain
CDDcd000861.71E-1887145No hitNo description
SMARTSM003894.9E-1989151IPR001356Homeobox domain
PfamPF000461.3E-1890145IPR001356Homeobox domain
PROSITE patternPS000270122145IPR017970Homeobox, conserved site
PROSITE profilePS5084843.054249489IPR002913START domain
SuperFamilySSF559611.32E-30251486No hitNo description
CDDcd088752.99E-104253485No hitNo description
SMARTSM002343.4E-56258486IPR002913START domain
PfamPF018521.4E-49259486IPR002913START domain
Gene3DG3DSA:3.30.530.201.2E-7322469IPR023393START-like domain
SuperFamilySSF559616.04E-8537724No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 744 aa     Download sequence    Send to blast
MGSNRPHSKD FFAAPALSLS LAGVFGRNAP AATTGGEEAE EGDKGNGGIR GVQVGEAVEI  60
SSENTRPGSR SGDGSGEEDH DDGGNKKRRR KNYHRHTADQ IRVMEAVFKE SPHPDEKQRQ  120
QLSKQLGLSA RQVKFWFQNR RTQIKAIQER HQNSLFKSEL EKLQKENRAM RELMKKPSRC  180
PNCGVAAASS DDAAAAAQEQ QLRLENAKLK AEIEKLRGTL GKVASPASPP FSAGTVKTSP  240
LDDYNGGFLG HDKPRILELS GRALDELTTM CSSGEPLWVR TVETGQDILN YDEYVRLFRR  300
DDDPGDQRAG WSVEATREIG VVYLDTMQLV HAFMDVNQWK DIFPSMISKA ATLDVIQTGE  360
NDSRDGVVQL MFAEQQMLTP MVPTREFYFA RYCRKLTAER WAIVDVSFDM GKVEPDVHAS  420
SLVRCWKNPS GCIIEEQTNG HCKVTWVEHT RCRKSTVPSM YRTATTSGLA FGARRWVATL  480
QLQCERMVFS VATNVPTRDS IDCSCRSVHT GRQEERSEAG LCRSIGGSRD LAWKAGSGDI  540
RLTSRKNVGD PGEPQGLIAC AVLSTWLPVN PTALFDFLRD ESRRPEWDVV LPGRSVQSCV  600
NLAKGKDRGN CVTAYAAKSE EEQSGKWILQ DSCTNSCESI IAYAPIDAAI LRPVISGHDS  660
SNAAVLPCGF SVMADGPGSK PTVITSRKED KTTEAGSLVT VAFQVLASSS PTAMLSPDSV  720
DTVESLVSCT LRNIKKALRC EDC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18491NKKRRRKN
28590KKRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000336G0690
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314016.10.0LOW QUALITY PROTEIN: homeobox-leucine zipper protein ROC9
SwissprotQ5JMF30.0ROC9_ORYSJ; Homeobox-leucine zipper protein ROC9
TrEMBLA0A446NQ740.0A0A446NQ74_TRITD; Uncharacterized protein
STRINGTraes_3B_1E2F1C353.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein