PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000331G1100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | NAC | ||||||||
Protein Properties | Length: 318aa MW: 35890.7 Da PI: 6.6293 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161.3 | 3.8e-50 | 24 | 151 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknr..atksgyWkatgkdkev 92 pGfrFhPtdeelv++yL++kv+gk+l++ e+ike+diyk+ePwd+p +++ ++ekewyfF+ r +ky+++ r+nr at sg+Wkatg d+++ PH01000331G1100 24 LPGFRFHPTDEELVTFYLRRKVAGKRLSI-EIIKEMDIYKHEPWDFPkASTVGGEKEWYFFCLRGRKYRNSIRPNRvtATGSGFWKATGIDRPI 116 69***************************.89***************445556889********************555669************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +s g +glkk+Lv+y+g+a kg+ktdW+mhe+rl PH01000331G1100 117 YS-AGDCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 151 **.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 54.183 | 23 | 180 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.44E-54 | 23 | 180 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-24 | 25 | 151 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MKSDQGEVVE EVIVGDEEKE DLVLPGFRFH PTDEELVTFY LRRKVAGKRL SIEIIKEMDI 60 YKHEPWDFPK ASTVGGEKEW YFFCLRGRKY RNSIRPNRVT ATGSGFWKAT GIDRPIYSAG 120 DCIGLKKSLV YYRGSAGKGT KTDWMMHEFR LPPHPENAVD STPPSLQEAE VWTICRIFKR 180 NITYKKQPQQ VAGKVAVAAV AQPDSSWITG SPESDCTGDE HMNFLPQAPV NNVNNGYNQQ 240 FQGQWNRVPQ PSPAMPMAAF HQSVLSPAMP NDLYKDGCWD DIGRMVMELT DPNFRAAGHY 300 IASKAADKLE TDMWGYV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 8e-50 | 16 | 186 | 8 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000331G1100 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP093277 | 0.0 | FP093277.1 Phyllostachys edulis cDNA clone: bphyem202p21, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025803594.1 | 1e-143 | transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 1e-80 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A3L6T4I2 | 1e-145 | A0A3L6T4I2_PANMI; Transcription factor JUNGBRUNNEN 1-like | ||||
STRING | Si030477m | 1e-131 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1191 | 38 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 4e-80 | NAC domain containing protein 42 |