PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000329G0590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | NAC | ||||||||
Protein Properties | Length: 244aa MW: 27669.8 Da PI: 6.5003 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 26.1 | 2.4e-08 | 21 | 151 | 8 | 127 |
NAM 8 hPtdeelvveyLkkkvegkkleleevikev..diykvePwdLpk.........kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkd 89 Ptd +l+ e L++ ++ e + + v ++ +++ w+Lp+ ++ee+ e yf + ++++ r+ +++yW PH01000329G0590 21 TPTDFQLLEENLRPYRQRYMSEWMKLPRGVnnGLPDMDRWELPActcrdaagqG-SGEEEgEKYFLTDCIYRSSSAPRQGFWQQRSYWDLGRGI 113 599999999999988888776666666666436899999***965777765422.22333488**99999998888888888889999954443 PP NAM 90 kevlskkgelvglkktLvfykgrapk.gektdWvmheyr 127 ++ + ++ g+k+t f++g+ ++ g+kt+Wvm+ y PH01000329G0590 114 RDESN-LSRFAGIKRTYDFHTGDPSRgGTKTNWVMNVYF 151 44333.5778**********996655279******9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 14.555 | 14 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.1E-7 | 20 | 150 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.83E-9 | 21 | 164 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MNALQLFEES LREGFPDLST TPTDFQLLEE NLRPYRQRYM SEWMKLPRGV NNGLPDMDRW 60 ELPACTCRDA AGQGSGEEEG EKYFLTDCIY RSSSAPRQGF WQQRSYWDLG RGIRDESNLS 120 RFAGIKRTYD FHTGDPSRGG TKTNWVMNVY FLIGQIAISR KTWFCAVYSR TTHPIDYDPR 180 PKCAAFHQPP NGEGSLSSTY TFFDPCSCQH SGKPCNHAIH GPSSSSSLST YAVSDQTLPP 240 ELTS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000329G0590 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP095496 | 0.0 | FP095496.1 Phyllostachys edulis cDNA clone: bphyst021g07, full insert sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18590 | 8 | 9 |