PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000320G0460
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 321aa    MW: 34396.5 Da    PI: 4.5458
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000320G0460genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2414.9e-13109149347
              AP2   3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaai 47 
                      y+GVr +k +g+W+AeIr  +     + +r +lg+f ta+ A +a+ 
  PH01000320G0460 109 YRGVRLRK-WGKWAAEIRNpF-----TgTRQWLGTFETADAASAAYQ 149
                      9*****99.**********55.....45**********666666664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.359108166IPR001471AP2/ERF domain
SMARTSM003805.6E-14108171IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-19108160IPR001471AP2/ERF domain
PfamPF008471.4E-7108148IPR001471AP2/ERF domain
CDDcd000185.36E-15109140No hitNo description
SuperFamilySSF541711.44E-14109156IPR016177DNA-binding domain
PRINTSPR003671.5E-8109120IPR001471AP2/ERF domain
PRINTSPR003671.5E-8131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MAPLNQQQML LKKVLAKKPK TKRLSGFGPK PSAAFSKPQP AAAVQPRRRI RVVFEDPDAT  60
DSDSDDEEAA AGGSNKRYFE LFVGKASAKT ATPAVTVAAC ANAGKAASYR GVRLRKWGKW  120
AAEIRNPFTG TRQWLGTFET ADAASAAYQS ASRSFAEEKC RRRGQPVVAA SPASSATPTP  180
TASSSSSTSA APFAHPSPSS VLEATKPALK PLSPEPTPTP NLASTDTAQL PDDPEFYQDL  240
LRGLQLPDID PMDFRAGLDA LDVSEVPAYL DGEQDLLLGD LADEELELDL DLDDIDDFPE  300
MPGCDFGRGM DEFLQTVNFC V
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000320G0460
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0916350.0FP091635.1 Phyllostachys edulis cDNA clone: bphylf048a20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154634.11e-141ethylene-responsive transcription factor ERF118-like
TrEMBLF2EDL61e-144F2EDL6_HORVV; Predicted protein
STRINGMLOC_69438.11e-145(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129302528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.14e-11related to AP2 6