PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000317G0680
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 559aa    MW: 62084.6 Da    PI: 4.3905
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000317G0680genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM137.39.6e-4311623311128
              NAM  11 deelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvgl 102
                      d elv++yLk+k+ gkkl + +vi+ v++yk+ PwdLp k ++++++ ewyfF++rdkky++g+r+nrat +gyWk+tgkd++++  +++ vg+
  PH01000317G0680 116 DVELVSYYLKRKIMGKKLFV-HVIPVVELYKYTPWDLPdKsCLRSRDLEWYFFCPRDKKYTKGSRSNRATPNGYWKTTGKDRTIVL-NSRIVGM 207
                      88***************998.89**************96347777888**************************************.999**** PP

              NAM 103 kktLvfykgrapkgektdWvmheyrl 128
                      kktL+f++g+apkg +tdWvm eyr+
  PH01000317G0680 208 KKTLIFHEGKAPKGDRTDWVMYEYRM 233
                      ************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100546.963106256IPR003441NAC domain
SuperFamilySSF1019411.44E-51116256IPR003441NAC domain
PfamPF023651.8E-19116233IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MSPHPDIPGR HHDWEERHLA AQEGIHYFDY NIDEILYPRD DVVHSQPADA PRQIFVGASQ  60
LHGAPPPSLS PTLSGLATSA EVGFGSIRGL IRDVEPLTWT CVFDLLCFHG LGPIGDVELV  120
SYYLKRKIMG KKLFVHVIPV VELYKYTPWD LPDKSCLRSR DLEWYFFCPR DKKYTKGSRS  180
NRATPNGYWK TTGKDRTIVL NSRIVGMKKT LIFHEGKAPK GDRTDWVMYE YRMEDNELEV  240
ADFLKDAYVL CKIFKKSGLG PKIGEQYGAP FNEEEWDDAN AEAAMFPLMA CPSSELADAV  300
DESPVQHTVA ASVVDEPPVL TVVAAAEGLP FEYNSTSTTA VDELQSYHTL ECRGSEVVSA  360
NNTSDALNAC DPPEFVGIVS NEWAGFLNDS PDCDGANEQL TELPVMPEAE AHALEINSDY  420
LYNELARLVE SEGAPTVHDQ CPGYLNTEYL NPPMISELGT GDNYLELNDI SPLGETISSK  480
MLVPDNLFPQ YFSDQFPYNK LNYPHYENDG ALAASLAAGN LLPSIPSYIH DMPVHDMTST  540
TNLMGNNGSN PTMRYPFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-3911625725169Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000317G0680
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970791.10.0NAC domain-containing protein 82
RefseqXP_004970792.10.0NAC domain-containing protein 82
RefseqXP_004970796.10.0NAC domain-containing protein 82
RefseqXP_012701858.10.0NAC domain-containing protein 82
RefseqXP_012701859.10.0NAC domain-containing protein 82
TrEMBLK3XHI10.0K3XHI1_SETIT; Uncharacterized protein
STRINGSi001352m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47313664
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.14e-67NAC domain containing protein 103