PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000317G0520
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GRAS
Protein Properties Length: 573aa    MW: 63865.9 Da    PI: 4.7022
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000317G0520genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4163.3e-1272035722374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      ++lL++cA+a+s+ +  +aqa+++ l++++s +gdp qR+aay++e+L ar++ s++++yk+l++++ +   +  +l+a+++++e++P+++f++
  PH01000317G0520 203 KQLLFDCATALSEYNIDEAQAIITDLRQMVSIQGDPSQRIAAYVVEGLTARIVASGKGIYKTLTCKDPP---TLYQLSAMQILFEICPCFRFGF 293
                      589*****************************************************************9...89999***************** PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                      ++aN aIlea + eer+HiiDfdi+qG Q+++L+q L++ +++p +lRiTgv++pe++      l+ +g+rL+k+A  +gv+fef++ v  ++ 
  PH01000317G0520 294 MAANYAILEACKVEERLHIIDFDINQGSQYITLIQFLTNNANKPRHLRITGVDDPETVqrTVGGLKVIGQRLEKLAGDCGVSFEFRA-VGANIG 386
                      ********************************************************99778889***********************.799*** PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                       +++ +L+++pgEal+Vn+++qlh+l+desvs+ +erd++L++vk+l+Pk+v++ve +a++n+++Fl+rf e  ++ysalfdsl+a+lpr s +
  PH01000317G0520 387 HVTPAMLDCRPGEALVVNFAFQLHHLPDESVSIMNERDQLLRMVKGLQPKLVTLVELDANTNTAPFLTRFREVYDFYSALFDSLDATLPRGSPD 480
                      ********************************************************************************************** PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      r++vEr++l+r+ivn++aceg +r+er+e ++kWr+r+++aGF p p+++++  ++++ll+ + ++ y+ ee++g l +gW +++L++ SaWr
  PH01000317G0520 481 RMNVERQCLARQIVNILACEGPDRVERCEVAGKWRARMTMAGFVPCPFNSSVIGEIRSLLKAYCDR-YKFEEDHGGLHFGWGEKTLIVSSAWR 572
                      ***************************************************************966.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.099176553IPR005202Transcription factor GRAS
PfamPF035141.1E-124203572IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MSFVRQAYPS TTYADDIYIH KFGAPNSNFA ARRFASDTQL FRYGPEPYNS EDYGHMGVTE  60
APSAAFLNSF YNQQASLTPY HVTADSRSAA VADNQSNSCS DEAKESPVVS NVSQQNSQYL  120
SDNQSSELEA EFDEDEIRLK LQELEHALLD DGDDILFEIS KAGGINDEWA NPMKNVLFPY  180
SPKEPESSIN CAGSNNEEAR TPKQLLFDCA TALSEYNIDE AQAIITDLRQ MVSIQGDPSQ  240
RIAAYVVEGL TARIVASGKG IYKTLTCKDP PTLYQLSAMQ ILFEICPCFR FGFMAANYAI  300
LEACKVEERL HIIDFDINQG SQYITLIQFL TNNANKPRHL RITGVDDPET VQRTVGGLKV  360
IGQRLEKLAG DCGVSFEFRA VGANIGHVTP AMLDCRPGEA LVVNFAFQLH HLPDESVSIM  420
NERDQLLRMV KGLQPKLVTL VELDANTNTA PFLTRFREVY DFYSALFDSL DATLPRGSPD  480
RMNVERQCLA RQIVNILACE GPDRVERCEV AGKWRARMTM AGFVPCPFNS SVIGEIRSLL  540
KAYCDRYKFE EDHGGLHFGW GEKTLIVSSA WR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-5919557112378Protein SCARECROW
5b3h_A4e-5919557111377Protein SCARECROW
5b3h_D4e-5919557111377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000317G0520
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0608330.0AK060833.1 Oryza sativa Japonica Group cDNA clone:001-034-C07, full insert sequence.
GenBankAK0674570.0AK067457.1 Oryza sativa Japonica Group cDNA clone:J013106L10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564775.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLI1HU000.0I1HU00_BRADI; Uncharacterized protein
STRINGBRADI2G56910.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51753860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]