PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000309G0360

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

NAC

Protein Properties

Length: 257aa MW: 27831.9 Da PI: 5.4336

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000309G0360	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	144	8.5e-45	5	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppG+rF Pt+eel+++yL++k+++++ ++e+vi+ vd+y+v+Pw+L + ++e + w++F++r++++a+g r++r+t sgyWka g+ PH01000309G0360 5 LPPGYRFYPTEEELICFYLRNKLDSRRDDIERVIPVVDVYSVDPWQLSEiherlcGGASEGEPWFYFCPRQEREARGGRPSRTTPSGYWKAAGT 98 79**************************99***********8545665433336779*************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s++++ +g+kkt+vfy+grap+g+kt+W m+eyr+ PH01000309G0360 99 PGVVYSAGRRPIGMKKTMVFYRGRAPSGTKTKWKMNEYRA 138 ************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-49	3	180	IPR003441	NAC domain
PROSITE profile	PS51005	47.558	5	180	IPR003441	NAC domain
Pfam	PF02365	2.5E-24	6	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MADGLPPGYR FYPTEEELIC FYLRNKLDSR RDDIERVIPV VDVYSVDPWQ LSEIHERLCG 60 GASEGEPWFY FCPRQEREAR GGRPSRTTPS GYWKAAGTPG VVYSAGRRPI GMKKTMVFYR 120 GRAPSGTKTK WKMNEYRAFQ YDAAGATAGA GSSSSAHAAA PPNLPPQLRS EFSLCRLYTK 180 SGPLRQFDRR PLAAAAGGAG ENPGPSTAAA ALPDDDDGSG GSMQQSQQQE QMEGGDGDPY 240 GDDMASLAAV LYWPGD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-31	5	140	17	144	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-31	5	140	17	144	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-31	5	140	17	144	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-31	5	140	17	144	NO APICAL MERISTEM PROTEIN
4dul_A	3e-31	5	140	17	144	NAC domain-containing protein 19
4dul_B	3e-31	5	140	17	144	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000309G0360

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK071274	1e-174	AK071274.1 Oryza sativa Japonica Group cDNA clone:J023087C18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020158560.1	1e-136	NAC domain-containing protein 90-like
Swissprot	Q9FMR3	2e-66	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A1E5URX2	1e-137	A0A1E5URX2_9POAL; NAC domain-containing protein 90
STRING	EMT13975	1e-136	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	5e-67	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]