PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000305G0690
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARF
Protein Properties Length: 636aa    MW: 69464.3 Da    PI: 7.5284
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000305G0690genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.51.4e-2469170199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f k+lt+sd+++ g +++p+ +ae++         ++ +  t+ ++d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   ++
  PH01000305G0690  69 FAKTLTQSDANNGGGFSVPRYCAETIfpkldyrADPPVQ--TVLVKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RT 158
                      89****************************996555555..8************************************************..55 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      + +el+v+++r+
  PH01000305G0690 159 EHGELCVGIRRA 170
                      999*******97 PP
2Auxin_resp118.65e-39228309383
       Auxin_resp   3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      + a+++++FevvY+Prast+eFvvk+++v+ a+++++++GmRfkmafetedss++++ +Gt+++v+ +dpvrWpnS+Wr+L+
  PH01000305G0690 228 SLAANGQPFEVVYYPRASTPEFVVKAASVQVAMRIQWCPGMRFKMAFETEDSSRISWfMGTISSVQVADPVRWPNSPWRLLQ 309
                      67899***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-3660172IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.72E-2965173IPR015300DNA-binding pseudobarrel domain
CDDcd100171.05E-2168169No hitNo description
PfamPF023621.4E-2269170IPR003340B3 DNA binding domain
SMARTSM010192.0E-2269171IPR003340B3 DNA binding domain
PROSITE profilePS5086313.29669171IPR003340B3 DNA binding domain
PfamPF065078.3E-34228309IPR010525Auxin response factor
PROSITE profilePS5174520.017540626IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MAAGPRALPA LVLCCVAGVR FLADPETDEV YAKIRLVPVG PGEVEFREPE ELGPLGDDPA  60
EAREKLASFA KTLTQSDANN GGGFSVPRYC AETIFPKLDY RADPPVQTVL VKDVHGEVWK  120
FRHIYRGTPR RHLLTTGWST FVNQKKLVAG DSIVFLRTEH GELCVGIRRA KRVACGGMEC  180
MSGWNAPGYG GFSAFLKDEE NKFMKGPGGY VRRGRGKVKI ADVVEKASLA ANGQPFEVVY  240
YPRASTPEFV VKAASVQVAM RIQWCPGMRF KMAFETEDSS RISWFMGTIS SVQVADPVRW  300
PNSPWRLLQV SWDEPDLLQN VKCVSPWLVE LVSSIPPIHL GPFPPPRKKL RMPQHPDFPF  360
DGHLLNPIFH GNPLGPSNSP LCCYPDNAPA GIQGARHAQF GLPLTDHQLN KLHLGLFQGS  420
GFNRLDAITP SSRISKGFVI SSTPAHDSVS CLLTIGTPQG TEKSDDRKTP HIMLFGKAIL  480
TEQQITSSGS RETFSPGITG NSSPNGNEKK AGNASDGSGS SICIGFSSQG HEASDLGLEA  540
GHCKVFMESE DVGRTIDLSV FGSYEELYGQ LADMFGIENE EIVSHLRYRD AAGVVKHTGE  600
VPFSDFMKVA RRLTIIAGDR GRLQKPLIEC MVERV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-668334102392Auxin response factor 5
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1345351PRKKLRM
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000305G0690
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234830.10.0auxin response factor 22
SwissprotQ9AV470.0ARFV_ORYSJ; Auxin response factor 22
TrEMBLA0A3B5XY330.0A0A3B5XY33_WHEAT; Auxin response factor
TrEMBLA0A3B5YWP30.0A0A3B5YWP3_WHEAT; Auxin response factor
TrEMBLA0A446IU760.0A0A446IU76_TRITD; Auxin response factor
TrEMBLA0A446JTM80.0A0A446JTM8_TRITD; Auxin response factor
STRINGBRADI3G28950.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]