PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000304G0340 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ERF | ||||||||
Protein Properties | Length: 172aa MW: 18633.9 Da PI: 5.3093 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.3 | 1.9e-18 | 4 | 54 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++k +g+Wv+eIr p g ++r++lg+f +ae+Aa a++ a+++l+g PH01000304G0340 4 CQYRGVRRRK-WGKWVSEIRQP---GTKTRIWLGSFESAEMAAVAHDVAALRLRG 54 68*****998.**********8...325*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.5E-12 | 4 | 54 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.87E-31 | 4 | 62 | No hit | No description |
PROSITE profile | PS51032 | 23.709 | 5 | 62 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-31 | 5 | 62 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.99E-22 | 5 | 63 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.6E-36 | 5 | 68 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-10 | 6 | 17 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-10 | 28 | 44 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MSSCQYRGVR RRKWGKWVSE IRQPGTKTRI WLGSFESAEM AAVAHDVAAL RLRGRDAQLN 60 FPGSVDLLPR PASSHPSDIR AAAAEAADRA RCEPALVARC GPEFGGAGSD SDRAVPSRVE 120 LGGSDEEFEV DSPRLWAEMA EAMLLDPPAW ATGAGEMEVA HCWSHGSLWD AC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-17 | 5 | 66 | 5 | 67 | ATERF1 |
3gcc_A | 7e-17 | 5 | 66 | 5 | 67 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000304G0340 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP096569 | 0.0 | FP096569.1 Phyllostachys edulis cDNA clone: bphyem127p14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003581277.1 | 2e-78 | ethylene-responsive transcription factor ERF027 | ||||
TrEMBL | A0A446ME01 | 2e-78 | A0A446ME01_TRITD; Uncharacterized protein | ||||
STRING | ORUFI04G15010.1 | 3e-75 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2244 | 33 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33760.1 | 1e-25 | ERF family protein |