PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000303G0700

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bZIP

Protein Properties

Length: 368aa MW: 40380.6 Da PI: 7.0816

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000303G0700	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.7	3.7e-11	71	111	2	42
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42 +e+k +rr+++NReAAr+sR+RKka+i++Le+ +L + PH01000303G0700 71 PEDKTQRRLAQNREAARKSRLRKKAYIQNLETSRMKLAQLE 111 589****************************8655554444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.2E-9	70	149	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	8.0E-9	70	118	No hit	No description
PROSITE profile	PS50217	9.289	72	116	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.2E-8	72	113	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.46E-7	74	116	No hit	No description
PROSITE pattern	PS00036	0	77	92	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.3E-29	158	232	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MGIYGRRHQP LASGVWGEPF RPDSSSQAAA AVATGATMEA KFDNRVEDAD VPLQEALRSS 60 PDSFDQEGTR PEDKTQRRLA QNREAARKSR LRKKAYIQNL ETSRMKLAQL EQELNRARQQ 120 GVYISGSSPV GLSGPLDSGV AVFEMEYAHW VEEQGKQTGE LRAALQAHAS EIQLRILVEA 180 GLAHYERLFQ AKSMAAKSDV FFVMSGMWRT AAERFFLWIS GFRPSELLKI LISQLEPLTE 240 QQATAVSRLQ QTARQAEDAL SQGMEKLQQT LAESLTTTAV VAQGADSSLD AAAAGSYMGQ 300 MASAMGSLDA LVGFVDQADH LRQQTLQNMY MILTARQAAR GLLALGDYCQ RLRALSSLWA 360 ARPREPA*

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MGIYGRRHQP LASGVWGEPF RPDSSSQAAA AVATGATMEA KFDNRVEDAD VPLQEALRSS  60
PDSFDQEGTR PEDKTQRRLA QNREAARKSR LRKKAYIQNL ETSRMKLAQL EQELNRARQQ  120
GVYISGSSPV GLSGPLDSGV AVFEMEYAHW VEEQGKQTGE LRAALQAHAS EIQLRILVEA  180
GLAHYERLFQ AKSMAAKSDV FFVMSGMWRT AAERFFLWIS GFRPSELLKI LISQLEPLTE  240
QQATAVSRLQ QTARQAEDAL SQGMEKLQQT LAESLTTTAV VAQGADSSLD AAAAGSYMGQ  300
MASAMGSLDA LVGFVDQADH LRQQTLQNMY MILTARQAAR GLLALGDYCQ RLRALSSLWA  360
ARPREPA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000303G0700

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP097739	0.0	FP097739.1 Phyllostachys edulis cDNA clone: bphyem210f19, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010905948.1	1e-165	transcription factor TGA4 isoform X1
Refseq	XP_029117024.1	1e-165	transcription factor TGA4 isoform X1
Swissprot	A0A0P0WFC8	1e-135	TGAL6_ORYSJ; Transcription factor TGAL6
TrEMBL	M0SZ42	1e-163	M0SZ42_MUSAM; Uncharacterized protein
TrEMBL	W0FAU1	1e-162	W0FAU1_MUSAC; Transcription factor tga1
STRING	GSMUA_Achr5P16630_001	1e-163	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3571	38	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-116	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Okada A, et al. OsTGAP1, a bZIP transcription factor, coordinately regulates the inductive production of diterpenoid phytoalexins in rice. J. Biol. Chem., 2009. 284(39): p. 26510-8 [PMID:19635799] Okada K The biosynthesis of isoprenoids and the mechanisms regulating it in plants. Biosci. Biotechnol. Biochem., 2011. 75(7): p. 1219-25 [PMID:21737944] Yamane H Biosynthesis of phytoalexins and regulatory mechanisms of it in rice. Biosci. Biotechnol. Biochem., 2013. 77(6): p. 1141-8 [PMID:23748776] Miyamoto K, et al. Identification of target genes of the bZIP transcription factor OsTGAP1, whose overexpression causes elicitor-induced hyperaccumulation of diterpenoid phytoalexins in rice cells. PLoS ONE, 2014. 9(8): p. e105823 [PMID:25157897] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]