PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000302G0910 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB | ||||||||
Protein Properties | Length: 296aa MW: 32877.2 Da PI: 6.127 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.3 | 7.2e-18 | 48 | 95 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT +Ed+ lv+ ++ +G g+W++ art g++Rt+k+c++rw++yl PH01000302G0910 48 RGPWTVDEDLTLVNFIADHGEGRWNSLARTAGLKRTGKSCRLRWLNYL 95 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.9 | 1.7e-16 | 101 | 144 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E++l++d++ ++G++ W++Ia++++ gRt++++k++w++ PH01000302G0910 101 RGNLTADEQLLILDLHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 144 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.467 | 43 | 95 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.43E-29 | 46 | 142 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-13 | 47 | 97 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-15 | 48 | 95 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-21 | 49 | 102 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.72E-9 | 50 | 95 | No hit | No description |
PROSITE profile | PS51294 | 23.218 | 96 | 150 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-14 | 100 | 148 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.3E-15 | 101 | 144 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.1E-23 | 103 | 149 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.04E-10 | 105 | 144 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MASSSERSRS GGGGGGGGGN TKAMACSLAL LDDDLHRGVL QEEAEFRRGP WTVDEDLTLV 60 NFIADHGEGR WNSLARTAGL KRTGKSCRLR WLNYLRPDVK RGNLTADEQL LILDLHSRWG 120 NRWSKIAQHL PGRTDNEIKN YWRTRVQKHA KQLNCDANSN RFKDAMRYLW MPRLVDQRLQ 180 HAAGFGDHGH GHGDTADAHA VSGLASMGYM ESSSMVTPSS SESFASESYD GDLYASVHAG 240 EMLNAGDWMQ EAANQGLWSE SAQDTNSQFQ DPELTGWVQG FSENFWSLED IWKVQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-24 | 45 | 142 | 1 | 97 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 2e-24 | 44 | 142 | 23 | 120 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000302G0910 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU406184 | 1e-142 | CU406184.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108M20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020162380.1 | 1e-126 | myb-related protein 340-like | ||||
Swissprot | Q2QZJ8 | 1e-108 | JAMYB_ORYSJ; Transcription factor JAMYB | ||||
TrEMBL | F2D9I9 | 1e-126 | F2D9I9_HORVV; Predicted protein | ||||
STRING | MLOC_6821.2 | 1e-126 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48000.1 | 1e-76 | myb domain protein 112 |
Publications ? help Back to Top | |||
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