PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000298G0850
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 309aa    MW: 33734 Da    PI: 9.113
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000298G0850genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.18.8e-33672071128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......s 80 
                      lp+G++F+Ptd+el+ ++L+ k++ ++      ++++   i+   +i++++P++Lp  v+++    +fF++ +k+y+tg+rk+r+++      +
  PH01000298G0850  67 LPAGVKFDPTDQELL-DHLEGKARPDSrkphplVDEFIPtIEGEnGICYTHPERLP-GVSKDGLVRHFFHRPSKAYTTGTRKRRKVHsdedggE 158
                      799************.99****988776675542222223665557**********.555666688******************8554565557 PP

              NAM  81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                       +W++tgk+++vl+ +g+  g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  PH01000298G0850 159 TRWHKTGKTRPVLA-NGRPRGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 207
                      78************.999***********6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-3858226IPR003441NAC domain
PROSITE profilePS5100533.02867226IPR003441NAC domain
PfamPF023657.1E-1568207IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MRMTWCNSFD DVRAAVDNSL SPAAAVAAAA GKKAAASLAV LVKMCPSCGH RAQYEQETTT  60
IQDLPGLPAG VKFDPTDQEL LDHLEGKARP DSRKPHPLVD EFIPTIEGEN GICYTHPERL  120
PGVSKDGLVR HFFHRPSKAY TTGTRKRRKV HSDEDGGETR WHKTGKTRPV LANGRPRGYK  180
KILVLYTNYG KQRKPEKTNW VMHQYHLGSD EEETDGELVV SKVFFQTQPR QCGSKEAAAA  240
ANSNSVHGVL AAGHHGVDNG VLKEANVVEF YNPAIMGYSQ GVPTNRAPSA AHFMPNFAVH  300
AGRNSFGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-126720715140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000298G0850
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU5507060.0KU550706.1 Bambusa emeiensis NAC1 (NAC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440245.11e-166NAC domain-containing protein 73
SwissprotO494591e-122NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A109PNR30.0A0A109PNR3_BAMEM; NAC1
STRINGSb09g028430.11e-165(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-115NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]