PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000297G0830
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family RAV
Protein Properties Length: 378aa    MW: 40199.6 Da    PI: 10.2343
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000297G0830genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.61.3e-1268116155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+ykGV   + +grW A+I++      r +r++lg+f  + eAa+a++ a+++++g
  PH01000297G0830  68 SKYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFTGEAEAARAYDVAAQRFRG 116
                      89****9888.8*********......44**********99*************98 PP
2B388.17.4e-28195296189
                      EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                      f+k+ tpsdv+k++rlv+pk++ae+h             g+ + +++ l +ed    g++W+++++y+++s++yvltkGW++Fvk++gL +gD 
  PH01000297G0830 195 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpaaatsgvGYGECKGVLLNFEDtaAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDA 288
                      89***************************999999888866677999******66667************************************ PP

                      EEEEE-SSSE CS
               B3  80 vvFkldgrse 89 
                      v F+++   +
  PH01000297G0830 289 VGFYRSA--G 296
                      ****543..3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.5E-868116IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-1668124IPR016177DNA-binding domain
CDDcd000185.34E-2368124No hitNo description
Gene3DG3DSA:3.30.730.101.4E-1969124IPR001471AP2/ERF domain
SMARTSM003803.2E-2669130IPR001471AP2/ERF domain
PROSITE profilePS5103219.86269124IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.0E-36190309IPR015300DNA-binding pseudobarrel domain
CDDcd100171.06E-26193301No hitNo description
SuperFamilySSF1019361.05E-26193298IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-24195296IPR003340B3 DNA binding domain
SMARTSM010193.8E-17195306IPR003340B3 DNA binding domain
PROSITE profilePS5086312.59195308IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MDSTSCLVDD ASSGASTGKK ALAPAVKPLQ RVGSGASAVM DAAEPGAEAD SGGAGRGGGG  60
GGGKLPSSKY KGVVPQPNGR WGAQIYERHQ RVWLGTFTGE AEAARAYDVA AQRFRGRDAV  120
TNFRPLAESD PEAAAELRFL AARSKTEVVD MLRKHTYLDE LAQNKRAFAA SSPSLPKNPT  180
SSPLAPSAVA REHLFDKTVT PSDVGKLNRL VIPKQHAEKH FPLQLPAAAT SGVGYGECKG  240
VLLNFEDTAA AGKVWRFRYS YWNSSQSYVL TKGWSRFVKE KGLHAGDAVG FYRSAGKQLF  300
IDCKLRPKTT TFVNAVAAPP PLKAVRLFGV DLLTTAPRSA AAPEQDDTTK IKRARDAVAA  360
SPPHVFFKKQ CIESALT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-4619230611117DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15563RGGGGGGGK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00025PBMTransfer from AT1G68840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000297G0830
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0996390.0FP099639.1 Phyllostachys edulis cDNA clone: bphyem117o01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807648.10.0AP2/ERF and B3 domain-containing protein Os05g0549800
SwissprotQ6L4H40.0Y5498_ORYSJ; AP2/ERF and B3 domain-containing protein Os05g0549800
TrEMBLA0A3L6SXE90.0A0A3L6SXE9_PANMI; AP2/ERF and B3 domain-containing protein
STRINGSi024576m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-101RAV family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]