PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000294G0540 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | HSF | ||||||||
Protein Properties | Length: 255aa MW: 28061.4 Da PI: 4.9867 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 78.5 | 1.1e-24 | 60 | 119 | 2 | 61 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYg 61 Fl+k+y++++d+ +++++sw e++++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+Y PH01000294G0540 60 FLTKTYQLVDDPCTDHVVSWGEDETTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYP 119 9*********************************************************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.6E-26 | 52 | 118 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 4.3E-26 | 56 | 153 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.2E-22 | 59 | 129 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 4.6E-21 | 60 | 130 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.7E-15 | 60 | 83 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.7E-15 | 98 | 110 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.7E-15 | 111 | 123 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MAARTSIVMF LVHGAVAGLF TGAPYTSAQR GQMAFLVERC SGEMVVSMEG SHAKPVPAPF 60 LTKTYQLVDD PCTDHVVSWG EDETTFVVWR PPEFARDLLP NYFKHNNFSS FVRQLNTYPP 120 PPVYHFQEDS AADSGGGDFL AALSEDNQQL RRRNSLLLSE LAHMRKLYND IIYFLQNHVE 180 PVPPPTPTPP ASCRLVELSP AECGASPQLR QRGDDTAVKL FGVRLNEGKK RRAQLEEGDG 240 DHGDGDGDDQ GSEV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 9e-16 | 56 | 128 | 26 | 97 | Heat shock factor protein 1 |
5d5v_B | 9e-16 | 56 | 128 | 26 | 97 | Heat shock factor protein 1 |
5d5v_D | 9e-16 | 56 | 128 | 26 | 97 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000294G0540 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054148 | 3e-73 | BT054148.1 Zea mays full-length cDNA clone ZM_BFb0133K13 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003561606.1 | 1e-88 | heat stress transcription factor B-4d | ||||
Swissprot | Q7XHZ0 | 9e-49 | HFB4B_ORYSJ; Heat stress transcription factor B-4b | ||||
TrEMBL | A0A0Q3LF32 | 2e-87 | A0A0Q3LF32_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G61620.1 | 7e-80 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 1e-40 | heat shock transcription factor B4 |
Publications ? help Back to Top | |||
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