PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000287G0830
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GRAS
Protein Properties Length: 305aa    MW: 32952.1 Da    PI: 7.3989
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000287G0830genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS220.49.3e-683930397374
             GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                         +a+l+++ g+ ++H++Dfdi+ G QW++L+q+La+R+ g + l++T+++s +s++  el+ + e+L++fA elgvpf+  v+   ++ +++
  PH01000287G0830  39 DPTSAVLDELGGAGCIHVLDFDIGVGEQWASLMQELAERRPG-AALKVTALVSTASHHPLELQLIDENLSNFALELGVPFQLAVF---NIGTMD 128
                      5678**********************************9655.89**************************************98...666666 PP

             GRAS 191 leeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                      + eL ++  g+a+aV+l + l + +    +     ++vL+lv++l +k+v+ v++ +d+++ +F++++++a++ ++ l++sl+a  +++s+ ++
  PH01000287G0830 129 PTELlAIAGGDAIAVHLPVGLVHAP----A----VPSVLHLVRRLGAKLVISVDRSSDRSELPFAAHLFQAFQSCVFLLESLDAV-GTDSDVAS 213
                      655428888***************9....4....456*********************************************998.89****** PP

             GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      k+Er+l++++++++v  ++++     +++  Wr ++ +aGF pv++s+ a++qa++ll+k++++g+rve++ gsl+l W++ +LvsvSaWr
  PH01000287G0830 214 KIERFLIQPKVESCVVRRHRA-ATAGNKMLPWRTMFASAGFVPVQISSLAEAQADSLLKKMPVRGFRVEKRAGSLLLHWQRGELVSVSAWR 303
                      ********************9.66666799************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098528.3531283IPR005202Transcription factor GRAS
PfamPF035143.2E-6539303IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MQEGKAARDT AAAATTPALL LLHGKHRQHQ LRWGFGFWDP TSAVLDELGG AGCIHVLDFD  60
IGVGEQWASL MQELAERRPG AALKVTALVS TASHHPLELQ LIDENLSNFA LELGVPFQLA  120
VFNIGTMDPT ELLAIAGGDA IAVHLPVGLV HAPAVPSVLH LVRRLGAKLV ISVDRSSDRS  180
ELPFAAHLFQ AFQSCVFLLE SLDAVGTDSD VASKIERFLI QPKVESCVVR RHRAATAGNK  240
MLPWRTMFAS AGFVPVQISS LAEAQADSLL KKMPVRGFRV EKRAGSLLLH WQRGELVSVS  300
AWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-174130398375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000287G0830
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194385.11e-158scarecrow-like protein 6
TrEMBLA0A287Q0U11e-165A0A287Q0U1_HORVV; Uncharacterized protein
TrEMBLA0A287Q0U61e-165A0A287Q0U6_HORVV; Uncharacterized protein
TrEMBLA0A287Q0V51e-165A0A287Q0V5_HORVV; Uncharacterized protein
STRINGTRIUR3_03541-P11e-162(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67232954
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.12e-62GRAS family protein