PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000286G1200
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARR-B
Protein Properties Length: 670aa    MW: 73566 Da    PI: 6.3962
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000286G1200genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.33.4e-28210263155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      +pr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl
  PH01000286G1200 210 RPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILELMNVEKLTRENVASHLQKYRL 263
                      59*******************.********************************8 PP
2Response_reg76.78.1e-26211291109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl vdD+p+ +++l+++l++ +y +v+++ ++  al+ll+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +ge +++ + +  
  PH01000286G1200  21 VLAVDDDPVCLKVLETLLRHCQY-HVTTTNQAITALKLLRENKemFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKTVMKGITH 112
                      799********************.***************999999*******************87754.558********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l Kp+ +eel++
  PH01000286G1200 113 GACDYLLKPVRIEELRN 129
                      ***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.4E-1981669IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23003.2E-4118142No hitNo description
SuperFamilySSF521727.97E-3518146IPR011006CheY-like superfamily
SMARTSM004481.0E-3019131IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.59420135IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.4E-2321130IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.31E-2522134No hitNo description
PROSITE profilePS5129411.127207266IPR017930Myb domain
SuperFamilySSF466892.87E-19208267IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-29208268IPR009057Homeodomain-like
TIGRFAMsTIGR015576.9E-25211263IPR006447Myb domain, plants
PfamPF002491.2E-6212262IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MEERKESMGR GRDQFPVGMR VLAVDDDPVC LKVLETLLRH CQYHVTTTNQ AITALKLLRE  60
NKEMFDLVIS DVHMPDMDGF KLLELVGLEM DLPVIMLSVN GETKTVMKGI THGACDYLLK  120
PVRIEELRNI WQHVVRRKFS NRECNNLDLY KEFNKPPSVD SFHGPSQVTC GSSDQSGRIN  180
RKRKELHSEE EDEGEENDIQ ENDEPSAAKR PRVVWSVELH RKFVAAVNQL GIDKAVPKRI  240
LELMNVEKLT RENVASHLQK YRLYLKRLSA VASQQASIAA AFGGRDPSFL HMGAFEGLHS  300
YQPFGPSAAL SSFNPHGLLS RTGATAFGLQ ELAPSKAIQS ATSNGTVSHC AGDTNKFQIV  360
SLQENQQANL TQGLTTSLGQ PQLQHKWIHQ ETNDLSTVFS ESVLANTMSG TLQRVTSSSL  420
PPQELFECTQ IKVGVHPSIR MPPESAGLLE RTVGVSTNLQ DSSISQQGTL PINDIFADKL  480
PLHSPFDSTG AAKLDASFAA SEKEIGQKGK FSVSIDSFTA ANNSKGGASS SGSTMLLPAD  540
IERHSNYLQF GVPSNSRHKM DGMKQDHIHN QRLNSGSFNY NVGASVTEQT DTIVPSLVPQ  600
MKIDTLTSED KLKQKNMYDL GISKLQGGFN SSSCNFDGLL SSIIKVEKDD VSFTDSDLGG  660
DFFPLGACI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-24206269164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000286G1200
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564200.10.0two-component response regulator ORR22
SwissprotQ5SML50.0ORR22_ORYSJ; Two-component response regulator ORR22
TrEMBLI1H0D50.0I1H0D5_BRADI; Two-component response regulator
STRINGBRADI1G47400.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-116response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]