PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000284G1150

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

HB-other

Protein Properties

Length: 803aa MW: 88407.1 Da PI: 5.363

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000284G1150	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.8	1.1e-09	557	596	13	52
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 + L+ +F+k++yps++ +e LA++lgLt qV+ WF R PH01000284G1150 557 QKLKVHFKKDPYPSRAIKESLAQELGLTFHQVTKWFASTR 596 67999*******************************8666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF49503	4.05E-5	30	64	IPR008972	Cupredoxin
Gene3D	G3DSA:2.60.40.420	1.3E-6	30	64	IPR008972	Cupredoxin
SuperFamily	SSF46689	8.55E-10	541	597	IPR009057	Homeodomain-like
PROSITE profile	PS50071	12.6	542	602	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.7E-10	543	595	IPR009057	Homeodomain-like
SMART	SM00389	1.9E-9	544	606	IPR001356	Homeobox domain
CDD	cd00086	4.46E-11	547	600	No hit	No description
Pfam	PF05920	7.0E-8	565	596	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 803 aa Download sequence Send to blast
MAASERGSSS EAWFLLVLGF FTAVVSSSEA YVFYAGGRDG WVVDPTESYN HWAERNRFQV 60 NDTIAVGIGG VGLLAISNCV RPPFFPYRIR CKKSSGQCLG NGKRKTGGAR NSYKRAVKRG 120 RKTSQVLPSK KYPLRSAHSS GRVLRSTSKN QNKAPSEDVN DNTTVQPTAK KGKRGRPSKG 180 ASPKNEYFRI RQRVRYILNR MNYEQSLIQA YASEVPPGDE GWLCPACDCK IDCIDVLNEL 240 QGSRLSIHDS WEKVFPEAAS LANGSKQIDA SDLPSDDSED NDYNPALAEG HMVDEDKSSA 300 EDGSEGSDSH GSDFITSSED SEPSKNKKSE SSKNKRAVDD LGLPSEDSED DDFNPAGPDS 360 SEDQKDESNS HESDFTSDSD DFCAEIAKSH GQDEVSAPSL SDVRTVDHHT DGMEISAVDN 420 RPNAEDSNHA FMETELEQDM VLPVSSRRLG ERLDYKKLYD DAYGKESSDS SDDEEWSANS 480 TPQKGNLEDS ETDSFAESLQ PAKRCSGSAP AGHQNNEHTP QSERLCGSAI EQQTEVLCSN 540 GSSSTAPKKH FGPIINQKLK VHFKKDPYPS RAIKESLAQE LGLTFHQVTK WFASTRHYSR 600 VAAAKNEKDP ENPTAENNDI ATIDSRQLRE SNDRVMEELT VDRNDMVSDD WMAQNNMNEG 660 SKEDIPFRQD TSCQQRVVVT PVVNQNCPTN SIEIGSPKVG PGASRNVGSP KGRSAENKIP 720 GLEFVDEARK KAILRELRKR KTGRALIGIH PEFLIGNLSS LKYFSHQKGS VECNSISVSV 780 VDSRNVVGHV PFSRAFDRAL FL*

Sequence ? help Back to Top

Protein Sequence Length: 803 aa Download sequence Send to blast

MAASERGSSS EAWFLLVLGF FTAVVSSSEA YVFYAGGRDG WVVDPTESYN HWAERNRFQV  60
NDTIAVGIGG VGLLAISNCV RPPFFPYRIR CKKSSGQCLG NGKRKTGGAR NSYKRAVKRG  120
RKTSQVLPSK KYPLRSAHSS GRVLRSTSKN QNKAPSEDVN DNTTVQPTAK KGKRGRPSKG  180
ASPKNEYFRI RQRVRYILNR MNYEQSLIQA YASEVPPGDE GWLCPACDCK IDCIDVLNEL  240
QGSRLSIHDS WEKVFPEAAS LANGSKQIDA SDLPSDDSED NDYNPALAEG HMVDEDKSSA  300
EDGSEGSDSH GSDFITSSED SEPSKNKKSE SSKNKRAVDD LGLPSEDSED DDFNPAGPDS  360
SEDQKDESNS HESDFTSDSD DFCAEIAKSH GQDEVSAPSL SDVRTVDHHT DGMEISAVDN  420
RPNAEDSNHA FMETELEQDM VLPVSSRRLG ERLDYKKLYD DAYGKESSDS SDDEEWSANS  480
TPQKGNLEDS ETDSFAESLQ PAKRCSGSAP AGHQNNEHTP QSERLCGSAI EQQTEVLCSN  540
GSSSTAPKKH FGPIINQKLK VHFKKDPYPS RAIKESLAQE LGLTFHQVTK WFASTRHYSR  600
VAAAKNEKDP ENPTAENNDI ATIDSRQLRE SNDRVMEELT VDRNDMVSDD WMAQNNMNEG  660
SKEDIPFRQD TSCQQRVVVT PVVNQNCPTN SIEIGSPKVG PGASRNVGSP KGRSAENKIP  720
GLEFVDEARK KAILRELRKR KTGRALIGIH PEFLIGNLSS LKYFSHQKGS VECNSISVSV  780
VDSRNVVGHV PFSRAFDRAL FL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	729	739	KKAILRELRKR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor involved in the regulation of gibberrelin (GA) signaling. Binds to the 5'-GATC-3' motif of HD16/EL1 promoter. Functions as a positive regulator of GA signaling by suppressing the expression of HD16/EL1, a negative regulator of GA signaling. {ECO:0000269\|PubMed:21951842}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000284G1150

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by gibberellin. {ECO:0000269\|PubMed:21951842}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006643653.1	0.0	PREDICTED: homeobox protein HOX1A isoform X1
Refseq	XP_006643654.1	0.0	PREDICTED: homeobox protein HOX1A isoform X1
Swissprot	Q8H991	0.0	HAZ1_ORYSJ; Homeobox protein HAZ1
TrEMBL	A0A0E0A746	0.0	A0A0E0A746_9ORYZ; Uncharacterized protein
STRING	OGLUM06G08790.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4393	37	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	7e-18	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Wen BQ,Xing MQ,Zhang H,Dai C,Xue HW Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1. J Integr Plant Biol, 2011. 53(11): p. 869-78 [PMID:21951842]