PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000281G1040
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB
Protein Properties Length: 267aa    MW: 29495.1 Da    PI: 9.1803
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000281G1040genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.6e-071560347
                     SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqky 47
                     +WT+eE +++ +a + l     +W+++a+ ++ g++  ++  ++ ++
  PH01000281G1040 15 SWTPEENKKFERALAGLDLCcpDWEKVAQAIP-GKSIFEVMTHFKDL 60
                     6*****************99************.********999875 PP

2Myb_DNA-binding47.83.3e-15129173347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + +++G+g+W+ I+r + ++Rt+ q+ s+ qky
  PH01000281G1040 129 PWTEEEHKLFLLGLEKYGKGDWRNISRNFVQTRTPTQVASHAQKY 173
                      8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.821263IPR001005SANT/Myb domain
SuperFamilySSF466897.9E-91568IPR009057Homeodomain-like
PfamPF002496.4E-61560IPR001005SANT/Myb domain
PROSITE profilePS500905.9591561IPR017877Myb-like domain
CDDcd001673.01E-51561No hitNo description
PROSITE profilePS5129418.246122178IPR017930Myb domain
SuperFamilySSF466893.87E-18123178IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-17125176IPR006447Myb domain, plants
SMARTSM007174.2E-13126176IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-12126172IPR009057Homeodomain-like
CDDcd001671.47E-11129174No hitNo description
PfamPF002497.5E-13129173IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MDHYASWGNC FLAHSWTPEE NKKFERALAG LDLCCPDWEK VAQAIPGKSI FEVMTHFKDL  60
VVDVQQIESG MVPFPVYGGA NGAASFTLQW DGKGGHGVGD FRHGYRFGGG CGKRHVGRTL  120
EQERKKGVPW TEEEHKLFLL GLEKYGKGDW RNISRNFVQT RTPTQVASHA QKYFIRLNSG  180
GKDKRRSSIH DITTVNLTDD RPPSPSQSSP LSNESNASTP TTAVGQFWLS ADAKQHSRVN  240
APFNSPSGTL GMPLRDQLAA SRSMLF*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000281G1040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455217.21e-146transcription factor DIVARICATA
RefseqXP_021312949.11e-146transcription factor DIVARICATA
SwissprotQ8S9H72e-76DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0A9PK931e-148A0A0A9PK93_ARUDO; Uncharacterized protein
STRINGOBART01G02710.11e-141(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78863348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-73MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]