PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000281G1040

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

MYB

Protein Properties

Length: 267aa MW: 29495.1 Da PI: 9.1803

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000281G1040	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.5	2.6e-07	15	60	3	47
SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqky 47 +WT+eE +++ +a + l +W+++a+ ++ g++ ++ ++ ++ PH01000281G1040 15 SWTPEENKKFERALAGLDLCcpDWEKVAQAIP-GKSIFEVMTHFKDL 60 6***************99********.******999875 PP
2	Myb_DNA-binding	47.8	3.3e-15	129	173	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + +++G+g+W+ I+r + ++Rt+ q+ s+ qky PH01000281G1040 129 PWTEEEHKLFLLGLEKYGKGDWRNISRNFVQTRTPTQVASHAQKY 173 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.82	12	63	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.9E-9	15	68	IPR009057	Homeodomain-like
Pfam	PF00249	6.4E-6	15	60	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	5.959	15	61	IPR017877	Myb-like domain
CDD	cd00167	3.01E-5	15	61	No hit	No description
PROSITE profile	PS51294	18.246	122	178	IPR017930	Myb domain
SuperFamily	SSF46689	3.87E-18	123	178	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-17	125	176	IPR006447	Myb domain, plants
SMART	SM00717	4.2E-13	126	176	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-12	126	172	IPR009057	Homeodomain-like
CDD	cd00167	1.47E-11	129	174	No hit	No description
Pfam	PF00249	7.5E-13	129	173	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MDHYASWGNC FLAHSWTPEE NKKFERALAG LDLCCPDWEK VAQAIPGKSI FEVMTHFKDL 60 VVDVQQIESG MVPFPVYGGA NGAASFTLQW DGKGGHGVGD FRHGYRFGGG CGKRHVGRTL 120 EQERKKGVPW TEEEHKLFLL GLEKYGKGDW RNISRNFVQT RTPTQVASHA QKYFIRLNSG 180 GKDKRRSSIH DITTVNLTDD RPPSPSQSSP LSNESNASTP TTAVGQFWLS ADAKQHSRVN 240 APFNSPSGTL GMPLRDQLAA SRSMLF*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000281G1040

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002455217.2	1e-146	transcription factor DIVARICATA
Refseq	XP_021312949.1	1e-146	transcription factor DIVARICATA
Swissprot	Q8S9H7	2e-76	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A0A9PK93	1e-148	A0A0A9PK93_ARUDO; Uncharacterized protein
STRING	OBART01G02710.1	1e-141	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7886	33	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	2e-73	MYB family protein

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]