PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000281G0890

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

RAV

Protein Properties

Length: 356aa MW: 38877.7 Da PI: 9.8043

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000281G0890	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	36.7	1.1e-11	64	112	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ r +r++lg+f +e a+a++ a+++++g PH01000281G0890 64 SRYKGVVPQP-NGRWGAQIYE------RhARVWLGTFPDEEAGARAYDVAALRYRG 112 78**9888.8*****......44******9999*********98 PP
2	B3	98.4	4.6e-31	179	272	1	87
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+ tpsdv+k++rlv+pk++ae+h + + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL++gD++vF+++ PH01000281G0890 179 FEKAVTPSDVGKLNRLVVPKQHAEKHfplkrapDATTGKGVLLNFEDGQGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRAGDTIVFSRSAY 272 89************************999997778899***********************************************97654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	9.7E-7	64	112	IPR001471	AP2/ERF domain
CDD	cd00018	3.04E-23	64	122	No hit	No description
SuperFamily	SSF54171	2.22E-16	64	121	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	4.1E-20	65	121	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.391	65	120	IPR001471	AP2/ERF domain
SMART	SM00380	8.5E-23	65	126	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.2E-7	66	77	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.2E-7	102	122	IPR001471	AP2/ERF domain
Gene3D	G3DSA:2.40.330.10	7.6E-39	175	285	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.19E-30	176	277	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.69E-29	177	270	No hit	No description
Pfam	PF02362	8.7E-28	179	271	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.113	179	286	IPR003340	B3 DNA binding domain
SMART	SM01019	2.1E-22	179	285	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MGVENLSSTA EYSSHSSGAS TATTESDAAQ LQPTAPTLPV ADVVSPADEV VTSRPASAAQ 60 QPSSRYKGVV PQPNGRWGAQ IYERHARVWL GTFPDEEAGA RAYDVAALRY RGRDAATNFP 120 EAAASAAELT FLAAHSKAEI VDMLRKHTYF DELRQGLRRG GGTGARAQPT PSWARAPLFE 180 KAVTPSDVGK LNRLVVPKQH AEKHFPLKRA PDATTGKGVL LNFEDGQGKV WRFRYSYWNS 240 SQSYVLTKGW SRFVREKGLR AGDTIVFSRS AYGPDKQLFI DCKKNKMTCT DGSDAPTVEK 300 PKESRVVRLF GVDIAGDGCQ KRGRAVEMAL EQGQEFFKRQ CVGAHQHSPA LGAFML

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MGVENLSSTA EYSSHSSGAS TATTESDAAQ LQPTAPTLPV ADVVSPADEV VTSRPASAAQ  60
QPSSRYKGVV PQPNGRWGAQ IYERHARVWL GTFPDEEAGA RAYDVAALRY RGRDAATNFP  120
EAAASAAELT FLAAHSKAEI VDMLRKHTYF DELRQGLRRG GGTGARAQPT PSWARAPLFE  180
KAVTPSDVGK LNRLVVPKQH AEKHFPLKRA PDATTGKGVL LNFEDGQGKV WRFRYSYWNS  240
SQSYVLTKGW SRFVREKGLR AGDTIVFSRS AYGPDKQLFI DCKKNKMTCT DGSDAPTVEK  300
PKESRVVRLF GVDIAGDGCQ KRGRAVEMAL EQGQEFFKRQ CVGAHQHSPA LGAFML

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wid_A	5e-50	178	293	13	125	DNA-binding protein RAV1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000281G0890

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP100686	0.0	FP100686.1 Phyllostachys edulis cDNA clone: bphyem201a06, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020191173.1	1e-175	AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X1
Refseq	XP_020200371.1	1e-175	AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X1
Refseq	XP_020201146.1	1e-175	AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X1
Swissprot	Q9AWS0	1e-160	Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBL	A0A1E5VZT6	1e-175	A0A1E5VZT6_9POAL; AP2/ERF and B3 domain-containing protein
STRING	Pavir.Eb00702.1.p	1e-177	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP456	38	203

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68840.2	4e-89	related to ABI3/VP1 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]