PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000273G0040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ZF-HD | ||||||||
Protein Properties | Length: 183aa MW: 18543.4 Da PI: 6.5736 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 103.6 | 1.3e-32 | 74 | 128 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +v+Y+eClkNhAa++Gg+a+DGCgEfmps geeg+ +alkC+ACgCHRnFHR+e + PH01000273G0040 74 AVKYRECLKNHAAAIGGNATDGCGEFMPS-GEEGSLEALKCSACGCHRNFHRKELD 128 689*************************9.999********************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 6.9E-30 | 75 | 127 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.3E-31 | 76 | 126 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-24 | 76 | 128 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.735 | 77 | 126 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MDLSGTQGGL PIPMHTASPY GGGELHHDHA NNNGQSHSQA LPSPPAAAEN SGKKRTAGVV 60 AGAGIGGGGG GGPAVKYREC LKNHAAAIGG NATDGCGEFM PSGEEGSLEA LKCSACGCHR 120 NFHRKELDDF DSDSCAAHGM GHAPVGAVTV SCMSDLIRSP HQEKRKDFLV KKQGGESDGW 180 DA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000273G0040 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK361579 | 7e-92 | AK361579.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1144B18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020179853.1 | 8e-57 | zinc-finger homeodomain protein 4-like isoform X1 | ||||
Swissprot | Q53N87 | 1e-45 | ZHD4_ORYSJ; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A3B6JHA7 | 2e-55 | A0A3B6JHA7_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453HG37 | 7e-56 | A0A453HG37_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453HGH9 | 2e-55 | A0A453HGH9_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453HH27 | 9e-56 | A0A453HH27_AEGTS; Uncharacterized protein | ||||
STRING | Traes_4BS_7322F0DC2.4 | 6e-56 | (Triticum aestivum) | ||||
STRING | Traes_4DS_F3750ABFD.1 | 6e-56 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP815 | 35 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 7e-29 | homeobox protein 31 |