PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000272G1180

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

Nin-like

Protein Properties

Length: 353aa MW: 40016.7 Da PI: 7.8984

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000272G1180	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81.9	6.3e-26	219	268	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+l d+++yF+lpi++A+++L++++++LKr+CRqyGI+RWPhRkiksl PH01000272G1180 219 ASITLVDIARYFHLPIREASSTLKIGVSILKRKCRQYGIPRWPHRKIKSL 268 78**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.475	203	288	IPR003035	RWP-RK domain
Pfam	PF02042	1.4E-20	220	268	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MDAAAVSTLS AFAVFASTVD HGRATALDAL LIALFSFRRA RRAVRSVHGY EVVGRGGRGG 60 WEKWVEREFV LSPSSCREVP VPIAAPRILP AEWRGRPVYR EGLVVVGTWR CILAFDSVAA 120 VAPPPTPPPV LSPFVNPRLM CVPSLYNDLE KLFRFQNVES VPELIQCDSE EQLTRSGAQE 180 KPSDEVDASE SDSDEDPQSG EELPEPVQKQ RRANQKHIAS ITLVDIARYF HLPIREASST 240 LKIGVSILKR KCRQYGIPRW PHRKIKSLDS LIHDLEYVID DTERDDVQKE KQKQEEKEKQ 300 DAILALTKRK RMLETEKETI QQMPAMDLMA ETKQFREDVF KRRYRAKNLA NE*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MDAAAVSTLS AFAVFASTVD HGRATALDAL LIALFSFRRA RRAVRSVHGY EVVGRGGRGG  60
WEKWVEREFV LSPSSCREVP VPIAAPRILP AEWRGRPVYR EGLVVVGTWR CILAFDSVAA  120
VAPPPTPPPV LSPFVNPRLM CVPSLYNDLE KLFRFQNVES VPELIQCDSE EQLTRSGAQE  180
KPSDEVDASE SDSDEDPQSG EELPEPVQKQ RRANQKHIAS ITLVDIARYF HLPIREASST  240
LKIGVSILKR KCRQYGIPRW PHRKIKSLDS LIHDLEYVID DTERDDVQKE KQKQEEKEKQ  300
DAILALTKRK RMLETEKETI QQMPAMDLMA ETKQFREDVF KRRYRAKNLA NE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000272G1180

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012612	8e-75	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015634161.1	1e-161	protein RKD5 isoform X1
TrEMBL	A0A0E0KTZ6	1e-162	A0A0E0KTZ6_ORYPU; Uncharacterized protein
STRING	OPUNC04G19530.1	1e-163	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10673	31	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	4e-35	RWP-RK domain-containing protein