PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000268G0950
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NF-X1
Protein Properties Length: 976aa    MW: 105526 Da    PI: 8.0671
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000268G0950genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X118.93.3e-06228245118
         zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                      CG+H C   CH+GpC++C
  PH01000268G0950 228 CGNHACRDVCHPGPCGEC 245
                      ****************** PP
2zf-NF-X116.71.6e-05491506116
         zf-NF-X1   1 CGkHkCqklCHeGpCp 16 
                      CG H C ++CH+ pC+
  PH01000268G0950 491 CGLHACARTCHPSPCD 506
                      ***************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd060082.43E-482147No hitNo description
SMARTSM004380.023109127IPR000967Zinc finger, NF-X1-type
PfamPF014227.2111126IPR000967Zinc finger, NF-X1-type
CDDcd060083.53E-10154202No hitNo description
SMARTSM004380.0054164183IPR000967Zinc finger, NF-X1-type
PfamPF014220.041164181IPR000967Zinc finger, NF-X1-type
CDDcd060088.36E-9218261No hitNo description
SMARTSM004388.4E-4228247IPR000967Zinc finger, NF-X1-type
PfamPF014221.9E-4228245IPR000967Zinc finger, NF-X1-type
CDDcd060083.84E-11276324No hitNo description
SMARTSM004380.026286305IPR000967Zinc finger, NF-X1-type
PfamPF014222.8E-4286303IPR000967Zinc finger, NF-X1-type
CDDcd060083.22E-5371423No hitNo description
SMARTSM004381.3381400IPR000967Zinc finger, NF-X1-type
PfamPF014220.11381398IPR000967Zinc finger, NF-X1-type
SMARTSM004380.49438456IPR000967Zinc finger, NF-X1-type
PfamPF01422120438454IPR000967Zinc finger, NF-X1-type
SMARTSM004380.43491526IPR000967Zinc finger, NF-X1-type
PfamPF014220.0019491506IPR000967Zinc finger, NF-X1-type
PfamPF0142239528554IPR000967Zinc finger, NF-X1-type
SMARTSM004380.36535556IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 976 aa     Download sequence    Send to blast
MVQRSAPVWS CGSCFSIFHL PCIRKWARSP ASAADATDPA SSWRCPGCQS VHAVLARDLA  60
YTCFCGRRRE PPNDFFLTPH SCGEPCSKPL EKTDPTGKSA STDDAATRCP HVCVLQCHPG  120
PCPPCKAFAP DRPCPCGKKT IVRRCADRST PVTCGQQCDR LLPCRRHRCE NVCHTGPCGD  180
CAVLISAHCF CRKKTETLLC GEMVVKGKLS EEEGVFSCSE VCGHMLACGN HACRDVCHPG  240
PCGECELVPG KVTTCHCGKT KLQEKRASCL DPMPTCDNVC DKKLSCGVHR CKVTCHEGEC  300
SLCLVRVEQR CRCGSSGQMV ECYKILKEEF RCNKPCGRKK NCGRHRCSEC CCPLSKPFAQ  360
HEGSDWDPHF CQISCGKKLQ CGQHGCSRLC HSGHCPRCHD TIFNDLTCAC GRTSIPPPLP  420
CSTPTPSCPH QCLVPQPCGH PASHQCHFGD CPPCVVPVMR ECIGGHVVLR NIPCGSKDIR  480
CNQPCGKNRQ CGLHACARTC HPSPCDMPPA NEDASSSSGG KASCGQVCGV PRRECKHTCT  540
ASCHPSSPCP DLRCEFPITI TCSCGCITAT VPCGAGGTSN GDNMFEVSII QKLPMPLQQV  600
ESNGRRVPLG QRKLSCDEEC AKMERKKVLA EAFNITTPNL DALHFGENSN TSDLLSDLFR  660
REPKWALAIE ERCKFLVVGK TRGNSSSSLK VHVFCHMMKD KRDAIRVIAD RWKLSVRAAG  720
WEPKRFVTIH VTPKSKLPVR ILGSKPGVPV TASHPYFDPL VDMDPRLVVA MLDLPRDADV  780
SALVLRFGGE CELVWLNDKN SVAVFNDPAR AATALRRLDY GSAYQGAAML LPSSSAQASS  840
SGNVWVAAQN GGLAAKGSAN PWKKATAEPN PSSGDWTGVI GHAPGSLWRR RDTAAQVMGT  900
QNRWNVLESD AAMSSGPVDV RKHAPRTAAT SSRPVDERKL APRTDAGSSA EPNAGPWVSK  960
LQPDVEVDDG EEACE*
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000268G0950
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643844.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A0E0HNJ40.0A0A0E0HNJ4_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PVW20.0A0A0E0PVW2_ORYRU; Uncharacterized protein
STRINGORUFI06G09920.10.0(Oryza rufipogon)
STRINGONIVA06G11110.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61303543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1