PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000266G1030

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bZIP

Protein Properties

Length: 318aa MW: 35451.1 Da PI: 8.6084

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000266G1030	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.6	7.3e-10	32	73	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le+ +L++ ++L PH01000266G1030 32 QKSLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 73 6889*************************9877777766555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.0E-8	24	76	No hit	No description
SMART	SM00338	1.8E-7	29	92	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.415	31	75	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.73E-7	33	76	No hit	No description
Pfam	PF00170	6.4E-7	33	73	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	36	51	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.0E-33	115	190	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009410	Biological Process	response to xenobiotic stimulus
GO:0009627	Biological Process	systemic acquired resistance
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MASECDGLEP GQGALVVASD SSDRSKDKYE DQKSLRRLAQ NREAARKSRL RKKAYVQQLE 60 NSRLKLTQLE QELQRARQQG IFISSSVDQS HSMSGNGALA FDMEYARWLE EHNRQINELR 120 AAVNAHASDN DLRCVVDKIM PHYEEIFKLK GNAAKADVFH VLSGMWKTPA ERCFLWLGGF 180 RPSELLKLLS TQLEPLTEQQ LSGICNLQQS SQQAEDALSQ GMEALQQSLA ETLAGSLGSS 240 GSTGNVANYM GQMAMAMGKL GTLENFLRQA DNLRQQTLQQ MQRILTTRQS ARALLVISDY 300 SSRLRALSSL WLARPKE*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00349	DAP	Transfer from AT3G12250	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000266G1030

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB051296	0.0	AB051296.1 Oryza sativa OsNIF3 mRNA for bZIP transcription factor, complete cds.
GenBank	AK242743	0.0	AK242743.1 Oryza sativa Japonica Group cDNA, clone: J090049N20, full insert sequence.
GenBank	HM991168	0.0	HM991168.1 Oryza sativa Japonica Group cultivar Dongjin putative TGA2-like protein 3 mRNA, complete cds.
GenBank	KM096571	0.0	KM096571.1 Oryza sativa Indica Group histone-binding protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010230791.1	0.0	transcription factor HBP-1b(c38)
Swissprot	Q0JNL3	0.0	TGA23_ORYSJ; Transcription factor TGA2.3
TrEMBL	I1HEK9	0.0	I1HEK9_BRADI; Uncharacterized protein
STRING	BRADI2G10830.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP486	38	185

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.5	1e-148	TGACG motif-binding factor 6

Publications ? help Back to Top
Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]