PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000265G1050
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Trihelix
Protein Properties Length: 422aa    MW: 45423.8 Da    PI: 9.254
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000265G1050genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.39.7e-1935124186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +Wt+  +  L++a++e+ e+l+rg+l++ +We+v++++     ++g +++ +qCk+k++nl+kryk + ++  +  + +++++p+f+++e
  PH01000265G1050  35 EWTDGAISSLLDAYTERFEQLNRGNLRGRDWEDVAAAVtdgqGKGGGSKTVEQCKNKIDNLKKRYKVECQRLAGAGAAAVNHWPWFKNME 124
                      5*************************************999999999*******************999999999899999********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.4E-2033126No hitNo description
Gene3DG3DSA:3.40.1160.102.4E-54178414IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536333.8E-41180414IPR001048Aspartate/glutamate/uridylate kinase
PfamPF006966.6E-7247394IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MRASTAPTST AAAKGRGGGG GAGGGASDYR KDREEWTDGA ISSLLDAYTE RFEQLNRGNL  60
RGRDWEDVAA AVTDGQGKGG GSKTVEQCKN KIDNLKKRYK VECQRLAGAG AAAVNHWPWF  120
KNMEQIVGNS PSPAASKPLA ATDDDKSRQQ QQHGNKRYPP SGTGPPTVVG GSRLTPLSNP  180
RWKRVLLKIG GTALAGAAPQ NVDPKVIMLI AREVQVACHH GVELQNLQNC YSRMCGELLL  240
QLHVYIFIPL RLNFVRMMAS VMNAVLLQAS LEKIGVETRV QTALMMQEVA EPYIRRRAIR  300
HLEKGRVVIF GGIGAGIGNP LFTTDTAAAL RASENVVLKG TAGDDEYGCP PRSNSNAPFE  360
HISFRELAAR GFSRMDLTAI TCCEENNIPV VIFNMLEPGN ISRAICGDQV GTLVDQSGRI  420
T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nwy_A1e-4916041430279Uridylate kinase
3nwy_B1e-4916041430279Uridylate kinase
3nwy_C1e-4916041430279Uridylate kinase
3nwy_D1e-4916041430279Uridylate kinase
3nwy_E1e-4916041430279Uridylate kinase
3nwy_F1e-4916041430279Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000265G1050
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1087571e-160AK108757.1 Oryza sativa Japonica Group cDNA clone:002-150-G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581179.10.0uncharacterized protein LOC100840998 isoform X1
TrEMBLA0A0E0KQ690.0A0A0E0KQ69_ORYPU; Uncharacterized protein
STRINGOPUNC04G09570.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19353442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-129Trihelix family protein