PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PH01000264G0790 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
||||||||
Family | LSD | ||||||||
Protein Properties | Length: 223aa MW: 23868.2 Da PI: 9.6987 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 22.2 | 2.4e-07 | 62 | 85 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C+gC+ +L+YPrG V+C+ C+t PH01000264G0790 62 CNGCKRVLQYPRGVAGVCCPGCHT 85 ***********************9 PP | |||||||
2 | zf-LSD1 | 30 | 8.7e-10 | 101 | 125 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gC tlL Y+rGA+++RC+ C+ V PH01000264G0790 101 CSGCLTLLVYTRGATNIRCSRCNRV 125 **********************966 PP | |||||||
3 | zf-LSD1 | 34.5 | 3.3e-11 | 139 | 161 | 1 | 23 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCd 23 Cg+Crt+L+YP+GA+ V+C+ C PH01000264G0790 139 CGQCRTTLMYPPGASTVQCPTCR 161 **********************6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.2E-7 | 59 | 89 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.5E-6 | 62 | 85 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 7.0E-11 | 99 | 126 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 6.0E-9 | 101 | 123 | IPR005735 | Zinc finger, LSD1-type |
Gene3D | G3DSA:3.30.40.10 | 2.2E-4 | 115 | 168 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
TIGRFAMs | TIGR01053 | 1.4E-9 | 136 | 161 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.4E-11 | 139 | 162 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 223 aa Download sequence Send to blast |
MRTMRGGCRQ IGGGKGGKER GRREVNEGGR EGGVVGWGRR EKRGVEEVEK EEDKGMQAQL 60 ICNGCKRVLQ YPRGVAGVCC PGCHTFTSIN PSGPEMSELI CSGCLTLLVY TRGATNIRCS 120 RCNRVNSTRS VNQIGHLTCG QCRTTLMYPP GASTVQCPTC RYDNPVRNNT RGSVAGQGAS 180 GPARSAPPDA RPQTVLVENP KTLDEKGKLV SNVVVGVTSW KR* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PH01000264G0790 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK120454 | 3e-36 | AK120454.1 Oryza sativa Japonica Group cDNA clone:J013104B05, full insert sequence. | |||
GenBank | CT830765 | 3e-36 | CT830765.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA016M05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025819951.1 | 3e-86 | protein LOL4-like isoform X2 | ||||
Swissprot | Q84UR0 | 6e-78 | LOL4_ORYSJ; Protein LOL4 | ||||
TrEMBL | A0A2T7D318 | 8e-85 | A0A2T7D318_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T8IEW4 | 8e-85 | A0A2T8IEW4_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6PMF8 | 8e-85 | A0A3L6PMF8_PANMI; Protein LOL4-like isoform X2 | ||||
STRING | Si014280m | 2e-80 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12333 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G20380.7 | 6e-39 | LSD family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|