PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000264G0790
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family LSD
Protein Properties Length: 223aa    MW: 23868.2 Da    PI: 9.6987
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000264G0790genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD122.22.4e-076285124
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdt 24
                     C+gC+ +L+YPrG   V+C+ C+t
  PH01000264G0790 62 CNGCKRVLQYPRGVAGVCCPGCHT 85
                     ***********************9 PP

2zf-LSD1308.7e-10101125125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      C+gC tlL Y+rGA+++RC+ C+ V
  PH01000264G0790 101 CSGCLTLLVYTRGATNIRCSRCNRV 125
                      **********************966 PP

3zf-LSD134.53.3e-11139161123
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCd 23 
                      Cg+Crt+L+YP+GA+ V+C+ C 
  PH01000264G0790 139 CGQCRTTLMYPPGASTVQCPTCR 161
                      **********************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.2E-75989IPR005735Zinc finger, LSD1-type
PfamPF069434.5E-66285IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010537.0E-1199126IPR005735Zinc finger, LSD1-type
PfamPF069436.0E-9101123IPR005735Zinc finger, LSD1-type
Gene3DG3DSA:3.30.40.102.2E-4115168IPR013083Zinc finger, RING/FYVE/PHD-type
TIGRFAMsTIGR010531.4E-9136161IPR005735Zinc finger, LSD1-type
PfamPF069434.4E-11139162IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MRTMRGGCRQ IGGGKGGKER GRREVNEGGR EGGVVGWGRR EKRGVEEVEK EEDKGMQAQL  60
ICNGCKRVLQ YPRGVAGVCC PGCHTFTSIN PSGPEMSELI CSGCLTLLVY TRGATNIRCS  120
RCNRVNSTRS VNQIGHLTCG QCRTTLMYPP GASTVQCPTC RYDNPVRNNT RGSVAGQGAS  180
GPARSAPPDA RPQTVLVENP KTLDEKGKLV SNVVVGVTSW KR*
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000264G0790
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1204543e-36AK120454.1 Oryza sativa Japonica Group cDNA clone:J013104B05, full insert sequence.
GenBankCT8307653e-36CT830765.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA016M05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819951.13e-86protein LOL4-like isoform X2
SwissprotQ84UR06e-78LOL4_ORYSJ; Protein LOL4
TrEMBLA0A2T7D3188e-85A0A2T7D318_9POAL; Uncharacterized protein
TrEMBLA0A2T8IEW48e-85A0A2T8IEW4_9POAL; Uncharacterized protein
TrEMBLA0A3L6PMF88e-85A0A3L6PMF8_PANMI; Protein LOL4-like isoform X2
STRINGSi014280m2e-80(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123332938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.76e-39LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]