PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000263G0900
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 379aa    MW: 40210.9 Da    PI: 6.738
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000263G0900genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.52.9e-07167189123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C +Cgk F+r  nL+ H+r H
  PH01000263G0900 167 HYCDICGKGFRRDANLRMHMRAH 189
                      68*******************99 PP
2zf-C2H212.50.00046253277123
                      EEETTTT..EEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCg..ksFsrksnLkrHirtH 23 
                      y C+ Cg  k+F    +L++H+r +
  PH01000263G0900 253 YACERCGgkKRFAVLADLRSHLRHC 277
                      89********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.53E-6164189No hitNo description
PROSITE profilePS5015711.78167189IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-6167189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0025167189IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280169189IPR007087Zinc finger, C2H2
SMARTSM0035575215248IPR015880Zinc finger, C2H2-like
SMARTSM0035517253276IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MESTTNQLAG AGAAVASSAT TASPPTVAGG EPSDSLTGAG TGGDGDPRAA LQRLAALGDR  60
MAAVRRRLAA SLSGESQPLS SSDIHSVSSE ISSAAHLVVL NAASLLSSSL PFPAPPPPPA  120
PPAPVQELPA AAAATSAQKH PQETTKGDGD YDVVELDAAE LLAEHVHYCD ICGKGFRRDA  180
NLRMHMRAHG DRFKTLDALS RPGQAKPPAG RDVRFSCPYT GCNRNRAHRR FRPLKSAVCA  240
RNHFRRSHCP KLYACERCGG KKRFAVLADL RSHLRHCGEE AQWRCSCGTT FSRKDKLFGH  300
LALFEGHMPA ITEPNKDVVS APTEASLDMM EEGGIEGNCD REEDEEDGFD QEFFKEWMEE  360
LRGGAGGTSW PGSAAAGQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000263G0900
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006648771.10.0PREDICTED: protein indeterminate-domain 13-like
TrEMBLA0A0E0K1F20.0A0A0E0K1F2_ORYPU; Uncharacterized protein
STRINGOPUNC02G19290.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125503236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.36e-70C2H2 family protein