PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000262G1070

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

Nin-like

Protein Properties

Length: 844aa MW: 92677.1 Da PI: 6.5985

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000262G1070	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	88.8	4.5e-28	527	577	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yF++++kdAA +Lgvc+T+LKriCRq+GI RWP+Rkik++ PH01000262G1070 527 EKTVSLHVLRQYFAGSLKDAATSLGVCPTTLKRICRQHGITRWPSRKIKKV 577 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.359	516	597	IPR003035	RWP-RK domain
Pfam	PF02042	6.8E-25	529	577	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.47E-20	734	831	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.0E-23	743	825	No hit	No description
PROSITE profile	PS51745	18.58	745	828	IPR000270	PB1 domain
SMART	SM00666	4.8E-17	745	828	IPR000270	PB1 domain
Pfam	PF00564	4.7E-14	746	825	IPR000270	PB1 domain
CDD	cd06407	5.76E-41	746	826	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 844 aa Download sequence Send to blast
MEEGDPQPSI SLARSRTPSE GAAVDLDLLE QLLSGDNAWL EVATNTSRSP NFFASPSSIF 60 SDATTTTTTP ANTWLIQSSG ASPSVRERFN QALAHIGETQ SYADVLVQLW VPVKSDDGQL 120 VLTTSGQPFT LDQSSDSLKR FREVSTTYRF SADVASGSSP GLPGRVFIGR LPEWSPDVRY 180 FTSYEYPRVS HAQYLDVHGT MGLPVFEKEN YSCLGVIELI MTRQKLNFTS ELNTICSALQ 240 AVHLRSTEVS IIPRIKFNSA SYKDALPEIV EVLRAACITH KLPLAQTWVT CAQQGKRGSR 300 HSDENYRYCI STIDAACFVN EPQMQSFHEA CSEHHLLRGQ GVAGKAFTTN QPCFLPEIGS 360 STKLEYPLSH YAKIFNLKGA VAIRLRCTRT GTADFVLEFF LPTDSEVLEE QKAVLDSLSG 420 TMRSVCQTLR VVTDKEMEDE AMLEMNELNS FSTQGKNKVE ELSFGDNATE HREEASWTSL 480 AGTSQKESDL VELRMHGMLS PGGQGSSLAD AQTTAEGSKV KRRTKTEKTV SLHVLRQYFA 540 GSLKDAATSL GVCPTTLKRI CRQHGITRWP SRKIKKVDHS LRKLQQIIDS VHGAETAFQL 600 NTLYKDLAYT PISSDNNLSG SVTVPPTNQS NLTDFEKSQH HRLSSNLPSI SHTHSSCSHS 660 SDSSPSCSGG ATKHPPQVGA DPMKSGGPVK HSPVQTVQTE NASINEHFSV QEAPRDLLQD 720 VTEKAIGGQH SSPSPSSPKQ NADVGMRVKA TFGSENVRFR LKPECDFQEL KQEIAKRLSI 780 VDTSYLIVKY LDDDSEWVLM TCDADLQECL HVYKLADIQT IKISVRLAAS PATRVTIGHT 840 GLS*

Sequence ? help Back to Top

Protein Sequence Length: 844 aa Download sequence Send to blast

MEEGDPQPSI SLARSRTPSE GAAVDLDLLE QLLSGDNAWL EVATNTSRSP NFFASPSSIF  60
SDATTTTTTP ANTWLIQSSG ASPSVRERFN QALAHIGETQ SYADVLVQLW VPVKSDDGQL  120
VLTTSGQPFT LDQSSDSLKR FREVSTTYRF SADVASGSSP GLPGRVFIGR LPEWSPDVRY  180
FTSYEYPRVS HAQYLDVHGT MGLPVFEKEN YSCLGVIELI MTRQKLNFTS ELNTICSALQ  240
AVHLRSTEVS IIPRIKFNSA SYKDALPEIV EVLRAACITH KLPLAQTWVT CAQQGKRGSR  300
HSDENYRYCI STIDAACFVN EPQMQSFHEA CSEHHLLRGQ GVAGKAFTTN QPCFLPEIGS  360
STKLEYPLSH YAKIFNLKGA VAIRLRCTRT GTADFVLEFF LPTDSEVLEE QKAVLDSLSG  420
TMRSVCQTLR VVTDKEMEDE AMLEMNELNS FSTQGKNKVE ELSFGDNATE HREEASWTSL  480
AGTSQKESDL VELRMHGMLS PGGQGSSLAD AQTTAEGSKV KRRTKTEKTV SLHVLRQYFA  540
GSLKDAATSL GVCPTTLKRI CRQHGITRWP SRKIKKVDHS LRKLQQIIDS VHGAETAFQL  600
NTLYKDLAYT PISSDNNLSG SVTVPPTNQS NLTDFEKSQH HRLSSNLPSI SHTHSSCSHS  660
SDSSPSCSGG ATKHPPQVGA DPMKSGGPVK HSPVQTVQTE NASINEHFSV QEAPRDLLQD  720
VTEKAIGGQH SSPSPSSPKQ NADVGMRVKA TFGSENVRFR LKPECDFQEL KQEIAKRLSI  780
VDTSYLIVKY LDDDSEWVLM TCDADLQECL HVYKLADIQT IKISVRLAAS PATRVTIGHT  840
GLS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000262G1070

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612116.1	0.0	protein NLP1-like isoform X2
Refseq	XP_015612117.1	0.0	protein NLP1-like isoform X2
Refseq	XP_025875998.1	0.0	protein NLP1-like isoform X2
TrEMBL	A0A0D3H9R1	0.0	A0A0D3H9R1_9ORYZ; Uncharacterized protein
STRING	OBART09G18730.2	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5554	38	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein