PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000261G1090
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family G2-like
Protein Properties Length: 469aa    MW: 52735 Da    PI: 7.766
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000261G1090genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.91.1e-3397151155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kprl+WtpeLH+rFv+av+qLGG+ekAtPkt+++lm+++gLtl+h+kSHLQkYRl
  PH01000261G1090  97 KPRLKWTPELHQRFVDAVNQLGGAEKATPKTVMRLMGIPGLTLYHLKSHLQKYRL 151
                      79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.38794154IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-3295152IPR009057Homeodomain-like
SuperFamilySSF466891.04E-1696152IPR009057Homeodomain-like
TIGRFAMsTIGR015575.1E-2397152IPR006447Myb domain, plants
PfamPF002499.3E-1099150IPR001005SANT/Myb domain
PfamPF143793.3E-22198245IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MAKSDAEPKT QDGSTLSGAF TAANSLSWAL NYRWRFKSHD VLLQKVESNV KQKMYHQHQG  60
PSELFAARTT FPMERHLFLR GGNTQGDSGL VLSTDAKPRL KWTPELHQRF VDAVNQLGGA  120
EKATPKTVMR LMGIPGLTLY HLKSHLQKYR LSKNLQAQAN VGTTKNTIGC EIVADRIPGI  180
SAPAMSNTNV IPQEEKTIQI GEALQMQIEV QRQLNEQLEV QRHLQLRIEA QGKYLQAVLE  240
QAQETLGKQN SGPANPEDAK IKISEPASQV SNECFSNTMS ETKESTSMPR LETRQIQFVE  300
SSTNNCLTSA EGFIKEHRLQ NHGMLKAYVD SSLFCRKQSH DHESQFSLNR SLSERRMGLG  360
HLHNVKEYHK AEFGSESDTE IPHEYIRPQK NSGGSTTSSA SGNKERDAEK LYLEEPTCKR  420
QAIEYPRESK LLDFEHPSSG KKLDLNTHNI DDSDQGYRHF DLNGFSWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-2096153158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-2096153158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A6e-2097153157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-2097153157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-2097153157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-2097153157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-2096153158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-2096153158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-2096153158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-2096153158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-2096153158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-2096153158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000261G1090
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024315320.10.0myb-related protein 2-like
RefseqXP_024315321.10.0myb-related protein 2-like
TrEMBLI1HI960.0I1HI96_BRADI; Uncharacterized protein
STRINGBRADI2G21880.20.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122793137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.37e-97G2-like family protein