PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000261G0890 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | NAC | ||||||||
Protein Properties | Length: 246aa MW: 27143.4 Da PI: 8.4743 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 102.3 | 6.6e-32 | 18 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeelv++yL++kv++ + ++ +i++vd+y+++PwdLp + + + s+r + ++t + + r++++g + tg+ k+ ++ PH01000261G0890 18 LPPGFRFHPTDEELVTHYLCRKVARLPPPV-PIIADVDLYRFDPWDLPGTWRCSGGGSGTSSRRGR-ASTPTGRGRTARRG--EGTGRPKKPVA 107 79*************************999.88***************644333333333344444.44555556666656..67888776666 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +vg+kk Lvfy+grap+g+ktdW+mheyrl PH01000261G0890 108 ----AVGVKKALVFYSGRAPRGVKTDWIMHEYRL 137 ....7***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.02E-42 | 14 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 41.886 | 18 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.9E-19 | 19 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MESCARREGR DAEAALNLPP GFRFHPTDEE LVTHYLCRKV ARLPPPVPII ADVDLYRFDP 60 WDLPGTWRCS GGGSGTSSRR GRASTPTGRG RTARRGEGTG RPKKPVAAVG VKKALVFYSG 120 RAPRGVKTDW IMHEYRLADA HRNNAGHSKL DEWVLCRLYN KKNNWEKVKA KAEAERSAAA 180 VTVDTLSDSV EMHGVSDVNN SYSYADMTAH ELDVAVMEDN NGWFTGLDLD DSQASCTGLG 240 PVWRW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-53 | 7 | 167 | 4 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000261G0890 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ985329 | 9e-43 | GQ985329.1 Triticum aestivum transcription factor TaNAC4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181126.1 | 2e-72 | NAC domain-containing protein 68-like | ||||
Swissprot | Q52QH4 | 1e-71 | NAC68_ORYSJ; NAC domain-containing protein 68 | ||||
TrEMBL | A0A446NT84 | 8e-74 | A0A446NT84_TRITD; Uncharacterized protein | ||||
TrEMBL | D9HQE0 | 8e-74 | D9HQE0_WHEAT; NAC transcription factor 4 | ||||
STRING | TRIUR3_04332-P1 | 8e-74 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14845 | 11 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63790.1 | 9e-34 | NAC domain containing protein 102 |