PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000260G0100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 345aa    MW: 37552.5 Da    PI: 7.6002
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000260G0100genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.85.8e-55141431129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdee++++yL++kv ++ +   ++i evd++k+ePwdLp+k+k +ekewyf++++d+ky+tg r+nrat++gyWkatgkd+e+++
  PH01000260G0100  14 LPPGFRFHPTDEEIITFYLTPKVLDRGFCS-TAIGEVDLNKSEPWDLPSKAKMGEKEWYFYCQKDRKYPTGMRTNRATEAGYWKATGKDREIYR 106
                      79*************************888.78***************99999***************************************** PP

              NAM  95 kkgel..vglkktLvfykgrapkgektdWvmheyrle 129
                       +++l  vg+kktLvfy+grap+gekt+Wvmheyrle
  PH01000260G0100 107 PGRQLllVGMKKTLVFYRGRAPRGEKTNWVMHEYRLE 143
                      8666567****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.02E-628178IPR003441NAC domain
PROSITE profilePS5100558.88214178IPR003441NAC domain
PfamPF023654.4E-2815142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MMGDQQQQMR GLDLPPGFRF HPTDEEIITF YLTPKVLDRG FCSTAIGEVD LNKSEPWDLP  60
SKAKMGEKEW YFYCQKDRKY PTGMRTNRAT EAGYWKATGK DREIYRPGRQ LLLVGMKKTL  120
VFYRGRAPRG EKTNWVMHEY RLEGSRLHLH YPTNSTAGAM INASSSKDEW VVCRIFHKSS  180
GMKKVPSYHM AMIGVGINDQ TSIPMAMAMG HQQGFPVDSS ATCTLPPHTD PSSLYATAAG  240
ANTSSVALPA SSSYLAAGPS LAGVGDAALQ MNGQYLGDPM AEAQAQAMFY QQMGAAGGFM  300
AEPASGPSSM VSQDTGLSND QNNNAAAAAE ISSVNMGMDG MWKY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-5421844171NO APICAL MERISTEM PROTEIN
1ut4_B9e-5421844171NO APICAL MERISTEM PROTEIN
1ut7_A9e-5421844171NO APICAL MERISTEM PROTEIN
1ut7_B9e-5421844171NO APICAL MERISTEM PROTEIN
3swm_A9e-5421847174NAC domain-containing protein 19
3swm_B9e-5421847174NAC domain-containing protein 19
3swm_C9e-5421847174NAC domain-containing protein 19
3swm_D9e-5421847174NAC domain-containing protein 19
3swp_A9e-5421847174NAC domain-containing protein 19
3swp_B9e-5421847174NAC domain-containing protein 19
3swp_C9e-5421847174NAC domain-containing protein 19
3swp_D9e-5421847174NAC domain-containing protein 19
4dul_A9e-5421844171NAC domain-containing protein 19
4dul_B9e-5421844171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000260G0100
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801540.11e-112NAC domain-containing protein 79-like
TrEMBLA0A3B6RPW91e-115A0A3B6RPW9_WHEAT; Uncharacterized protein
TrEMBLA0A446Y0941e-115A0A446Y094_TRITD; Uncharacterized protein
STRINGTraes_7AL_38B48B7B2.21e-116(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.23e-88NAC domain containing protein 80