PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000243G0600

Common Name

PH01B031C15.15

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

Nin-like

Protein Properties

Length: 880aa MW: 97820.6 Da PI: 6.3906

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000243G0600	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.5	4.1e-26	547	606	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLg.........vclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl+dl+k+F++++k+AAk+Lg vc+T+LKriCRq+GI+RWP+Rkik++ PH01000243G0600 547 EKTVSLQDLRKHFAGSLKEAAKNLGavmflpfvpVCPTTLKRICRQHGINRWPSRKIKKV 606 799*******************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	14.902	536	626	IPR003035	RWP-RK domain
Pfam	PF02042	8.6E-24	549	606	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.28E-22	771	865	No hit	No description
SMART	SM00666	6.5E-23	779	862	IPR000270	PB1 domain
PROSITE profile	PS51745	22.891	779	862	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.0E-24	779	861	No hit	No description
CDD	cd06407	1.04E-40	780	861	No hit	No description
Pfam	PF00564	1.4E-17	781	861	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 880 aa Download sequence Send to blast
MEQQQPSSDE DGLLGCGVPP GGAGVRFFGV LESRRRRVPA VRHRQATPPA PAGEDDRDEA 60 ERPGRLEASP ACRAWLFQPP QEAAEPTVKE RLQRALERIA SRSQSQSQSQ WQRGLGELLV 120 QFSADESARA ELGLPGRVFV GRVPEWTPDV RYFSTEEYPR VRHAQRFDIR GSVALPVFER 180 RSRACLGVIE LVMTTQKINY NAEIENICNA LKEVDLRGSD VSSDPRAKVV DTSYRAIVPE 240 IIDVLRTVCE THKLPLAQTW IPCVCQAKRA SRHSDEKCKY CISTVDEACY VRDPTVIGFH 300 QACSEHHLFR GEGVVGRAFG TNEPCFSPDI TAYSKAQYPL SHYAKLFSLR AAVAIQLRSV 360 RTGSLNFVLE FFLPMNCIKS EEQRAMLNSL SITIQQVCYT LRVVSAKELV NDESFGNSVP 420 TPPEFYSKSM PENLDELCSG INAPARTTSM GASEEVSSWI ASLLDAQNKG AKGEIDGDLP 480 FGFSKQEDEG FSVTAGWRTS PVLAPEASIF SEFKQHEEYE VKEATCSSDP NLSNSDKTVE 540 KRRTKMEKTV SLQDLRKHFA GSLKEAAKNL GAVMFLPFVP VCPTTLKRIC RQHGINRWPS 600 RKIKKVGHSL KKLQMVIDSV HGAEGTVQLS SLYEDFTKTT WSERELQGDL SFPASEQNVH 660 LEPSVPYRLC EGRFTSHTSG SNSLSPPSCS QSSNSSLGCS SGPKPQQQHG SAPPLAIEQE 720 ISMEENQSST LMKDASHAEL QMFTEERPVA LSTSESYMLL HEHKPMENMS SMQKAKPECL 780 KIKAMYGEER CIFRLQPSWG FQKLKEEITK RFGIAQETYV DLKYLDDESE WVLLTCDEDL 840 LECIDVYKSS SAKTVRILVN PTVQPVLGAG GSFGQTGLS*

Sequence ? help Back to Top

Protein Sequence Length: 880 aa Download sequence Send to blast

MEQQQPSSDE DGLLGCGVPP GGAGVRFFGV LESRRRRVPA VRHRQATPPA PAGEDDRDEA  60
ERPGRLEASP ACRAWLFQPP QEAAEPTVKE RLQRALERIA SRSQSQSQSQ WQRGLGELLV  120
QFSADESARA ELGLPGRVFV GRVPEWTPDV RYFSTEEYPR VRHAQRFDIR GSVALPVFER  180
RSRACLGVIE LVMTTQKINY NAEIENICNA LKEVDLRGSD VSSDPRAKVV DTSYRAIVPE  240
IIDVLRTVCE THKLPLAQTW IPCVCQAKRA SRHSDEKCKY CISTVDEACY VRDPTVIGFH  300
QACSEHHLFR GEGVVGRAFG TNEPCFSPDI TAYSKAQYPL SHYAKLFSLR AAVAIQLRSV  360
RTGSLNFVLE FFLPMNCIKS EEQRAMLNSL SITIQQVCYT LRVVSAKELV NDESFGNSVP  420
TPPEFYSKSM PENLDELCSG INAPARTTSM GASEEVSSWI ASLLDAQNKG AKGEIDGDLP  480
FGFSKQEDEG FSVTAGWRTS PVLAPEASIF SEFKQHEEYE VKEATCSSDP NLSNSDKTVE  540
KRRTKMEKTV SLQDLRKHFA GSLKEAAKNL GAVMFLPFVP VCPTTLKRIC RQHGINRWPS  600
RKIKKVGHSL KKLQMVIDSV HGAEGTVQLS SLYEDFTKTT WSERELQGDL SFPASEQNVH  660
LEPSVPYRLC EGRFTSHTSG SNSLSPPSCS QSSNSSLGCS SGPKPQQQHG SAPPLAIEQE  720
ISMEENQSST LMKDASHAEL QMFTEERPVA LSTSESYMLL HEHKPMENMS SMQKAKPECL  780
KIKAMYGEER CIFRLQPSWG FQKLKEEITK RFGIAQETYV DLKYLDDESE WVLLTCDEDL  840
LECIDVYKSS SAKTVRILVN PTVQPVLGAG GSFGQTGLS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000243G0600

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FO203444	0.0	FO203444.1 Phyllostachys heterocycla genomic DNA, BAC clone: PH01B031C15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629744.1	0.0	protein NLP1
Refseq	XP_015629745.1	0.0	protein NLP1
Swissprot	Q10S83	0.0	NLP1_ORYSJ; Protein NLP1
TrEMBL	L0P2L8	0.0	L0P2L8_9POAL; PH01B031C15.15 protein
STRING	OS03T0131100-01	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11025	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17150.1	1e-173	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]