PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000242G1390 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ERF | ||||||||
Protein Properties | Length: 263aa MW: 28512.1 Da PI: 9.1207 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.1 | 1.1e-18 | 92 | 142 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr + +g+WvAeIr p + r r++lg+++++e Aa a+++a+ kl+ge PH01000242G1390 92 LYRGVRLRQ-WGKWVAEIRLPQN---RVRVWLGTYDSPETAAHAYDRAAYKLRGE 142 59****998.**********954...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.13E-28 | 91 | 149 | No hit | No description |
SMART | SM00380 | 4.5E-31 | 92 | 155 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-22 | 92 | 149 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-29 | 92 | 149 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.616 | 92 | 149 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 93 | 104 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.8E-13 | 93 | 142 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 131 | 151 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MDASLRTLSP ASFPGEVRSA VSSLLLSPGA SSLDTVFSHL PPPVTIPPLG SSVYNRQSEL 60 LRHFAASQAQ STASSSSAAN FPAADDGAPR KLYRGVRLRQ WGKWVAEIRL PQNRVRVWLG 120 TYDSPETAAH AYDRAAYKLR GEYARLNFPG VMDGPDCPDN LRQLRAAIDA KIQAIRVRLA 180 RKRARARRQP EESKENPCTE GAKAPAAARP VVSEGATSET TTTSSYGSPD GVLSVSAASA 240 DAECLLERMP SFDPELIWEM LNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-17 | 88 | 149 | 1 | 63 | ATERF1 |
3gcc_A | 6e-17 | 88 | 149 | 1 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 179 | 185 | ARKRARA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000242G1390 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP092708 | 0.0 | FP092708.1 Phyllostachys edulis cDNA clone: bphyem112j04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638431.1 | 1e-125 | ethylene-responsive transcription factor ERF061 | ||||
TrEMBL | A0A0M4L961 | 1e-147 | A0A0M4L961_9POAL; DREB2A | ||||
STRING | OPUNC05G24070.1 | 1e-131 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8828 | 28 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22190.1 | 6e-32 | ERF family protein |