PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000242G0460 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | GATA | ||||||||
Protein Properties | Length: 216aa MW: 22581.5 Da PI: 7.9276 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 63.7 | 2.1e-20 | 94 | 128 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++ PH01000242G0460 94 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 128 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 14.299 | 88 | 124 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 6.9E-19 | 88 | 140 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.09E-14 | 91 | 130 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.3E-17 | 92 | 128 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.08E-14 | 93 | 125 | No hit | No description |
Pfam | PF00320 | 4.6E-18 | 94 | 128 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 94 | 119 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MLQELAPCTC GLLYGSCGGG CGGAAAAFSL LFPMASGQYY YRQCGAEEED GPVDCTLSLG 60 TPSTRRAVPS ALAGGKQEGA VASCKEAALP ARRCANCDTT STPLWRNGPR GPKSLCNACG 120 IRYKKEERRA AAAVAPPPPQ DSGVGYAYGY GRQQQPPTQW GCYGPAGAAK SASFAMFGDV 180 DTAEVDGTCL SWRLNMMPSS PAFAVRERPS LFQYY* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00472 | DAP | Transfer from AT4G36620 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000242G0460 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638692.2 | 6e-74 | GATA transcription factor 19 | ||||
TrEMBL | B9FLN6 | 9e-76 | B9FLN6_ORYSJ; Uncharacterized protein | ||||
STRING | ORUFI05G28050.1 | 2e-73 | (Oryza rufipogon) | ||||
STRING | OS05T0567900-00 | 2e-73 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1665 | 37 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36620.1 | 3e-27 | GATA transcription factor 19 |