PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000236G1170

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

Nin-like

Protein Properties

Length: 915aa MW: 100881 Da PI: 6.3993

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000236G1170	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.3	3.2e-28	594	644	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl+dl+k+F++++k+AAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++ PH01000236G1170 594 EKTVSLQDLRKHFAGSLKEAAKNLGVCPTTLKRICRQHGINRWPSRKIKKV 644 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.654	583	664	IPR003035	RWP-RK domain
Pfam	PF02042	6.7E-26	596	644	IPR003035	RWP-RK domain
SuperFamily	SSF54277	6.73E-21	808	902	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.3E-22	814	897	No hit	No description
PROSITE profile	PS51745	20.844	816	899	IPR000270	PB1 domain
SMART	SM00666	4.3E-20	816	899	IPR000270	PB1 domain
Pfam	PF00564	2.6E-15	817	898	IPR000270	PB1 domain
CDD	cd06407	3.75E-37	817	897	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 915 aa Download sequence Send to blast
MEQQPPPSDE DGLLGCGMSM AGDMAGVDLD LMEEFLLAPG FDFSEFLFPA AAGAFSPGPS 60 PFSPLFDIGS SAATATPPAP AGEDDRDEAE RPSWLEASPV RRAWLFQPTQ ETAEPTGAGA 120 RRVAVAVAVA AGAGRAAGAG VLTTCGQPFW LDRRNDRLAS YRTVSMKYQL SVDESARAEL 180 GLPGRVFVGR VPEWTPDVRY FSTEEYPRVR HAQHFDIRGS VALPVFERRS RACLGVVELV 240 MTTQKINYNA DIENICNALK EVDLRSSDVS SDPRAKVVDT SYRAIVPEII DVLRAVCETH 300 KLPLAQTWIL CACQAKRGIR HSDDKYKYCV STVDEACYVR DPTVIGFHQA CSEHHLFRGE 360 GVVGRAFGTK EPCFSPDITA YSKVQYPLSH YAKLFCLRAA VAIRLRSVRT GSLDFVLEFF 420 LPMNCIKSEE QRAMLNSLSI TIQQVCYTLR VVSVKELVND ESFENSVPTL PEFYAKSMPE 480 NLDELCRSIN APARTTSMEA SEVSSWIASL VDAQNKEAKG EIDADLPFGF SKQKDEGFSV 540 TAGWRTSPVL APEASIFSEF KQHEEYDVKG ATCSGDPSLS NLDKAVEKRH TKMEKTVSLQ 600 DLRKHFAGSL KEAAKNLGVC PTTLKRICRQ HGINRWPSRK IKKVGHSLKK LQMVIDSVHG 660 AEGTVQLSSL YENFTKTTWS ERELHGDLPF PASEQTVHLE PSVPGRLCEG RFTSHTSGSN 720 SLSPSCSQSS NSSLRCSSGP KPQQQHGSAP QLAIKQEISM EENQSSTLMK AGSHAELQMF 780 TEERPVTLSR SQSHMLLSEH KPMENMSSMQ KAKPDSLKIK AMYAEERCVF RLQSSWGFQK 840 LKEDITKRFG IAQGTYVDLK YLDDESEWVL LTCDADLLEC IDVYKSSSAK TVRILVNSTV 900 QPVLGGSYGQ TGLS*

Sequence ? help Back to Top

Protein Sequence Length: 915 aa Download sequence Send to blast

MEQQPPPSDE DGLLGCGMSM AGDMAGVDLD LMEEFLLAPG FDFSEFLFPA AAGAFSPGPS  60
PFSPLFDIGS SAATATPPAP AGEDDRDEAE RPSWLEASPV RRAWLFQPTQ ETAEPTGAGA  120
RRVAVAVAVA AGAGRAAGAG VLTTCGQPFW LDRRNDRLAS YRTVSMKYQL SVDESARAEL  180
GLPGRVFVGR VPEWTPDVRY FSTEEYPRVR HAQHFDIRGS VALPVFERRS RACLGVVELV  240
MTTQKINYNA DIENICNALK EVDLRSSDVS SDPRAKVVDT SYRAIVPEII DVLRAVCETH  300
KLPLAQTWIL CACQAKRGIR HSDDKYKYCV STVDEACYVR DPTVIGFHQA CSEHHLFRGE  360
GVVGRAFGTK EPCFSPDITA YSKVQYPLSH YAKLFCLRAA VAIRLRSVRT GSLDFVLEFF  420
LPMNCIKSEE QRAMLNSLSI TIQQVCYTLR VVSVKELVND ESFENSVPTL PEFYAKSMPE  480
NLDELCRSIN APARTTSMEA SEVSSWIASL VDAQNKEAKG EIDADLPFGF SKQKDEGFSV  540
TAGWRTSPVL APEASIFSEF KQHEEYDVKG ATCSGDPSLS NLDKAVEKRH TKMEKTVSLQ  600
DLRKHFAGSL KEAAKNLGVC PTTLKRICRQ HGINRWPSRK IKKVGHSLKK LQMVIDSVHG  660
AEGTVQLSSL YENFTKTTWS ERELHGDLPF PASEQTVHLE PSVPGRLCEG RFTSHTSGSN  720
SLSPSCSQSS NSSLRCSSGP KPQQQHGSAP QLAIKQEISM EENQSSTLMK AGSHAELQMF  780
TEERPVTLSR SQSHMLLSEH KPMENMSSMQ KAKPDSLKIK AMYAEERCVF RLQSSWGFQK  840
LKEDITKRFG IAQGTYVDLK YLDDESEWVL LTCDADLLEC IDVYKSSSAK TVRILVNSTV  900
QPVLGGSYGQ TGLS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000236G1170

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629744.1	0.0	protein NLP1
Refseq	XP_015629745.1	0.0	protein NLP1
Swissprot	Q10S83	0.0	NLP1_ORYSJ; Protein NLP1
TrEMBL	L0P2L8	0.0	L0P2L8_9POAL; PH01B031C15.15 protein
STRING	OS03T0131100-01	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11025	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17150.1	0.0	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]