PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000232G0180 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | GATA | ||||||||
Protein Properties | Length: 140aa MW: 15574.8 Da PI: 9.3912 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 62.4 | 5.5e-20 | 24 | 58 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C+ttkTplWR gp g+k+LCnaCG++yrk+++ PH01000232G0180 24 CADCHTTKTPLWRGGPTGPKSLCNACGIRYRKRRR 58 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 13.191 | 18 | 54 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.76E-13 | 18 | 57 | No hit | No description |
SMART | SM00401 | 2.4E-17 | 18 | 85 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.6E-16 | 22 | 58 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 9.93E-15 | 23 | 59 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 24 | 49 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 8.7E-18 | 24 | 58 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MDPSPPVDKV DPDECTASGE PKACADCHTT KTPLWRGGPT GPKSLCNACG IRYRKRRRQA 60 LGLDATETEG AEQQQQQQHR KKAKKENKED EVTVELHMVG FGKDVVLKQR RRMRRRKCLG 120 EEERAAILLM ALSSGVIYA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 53 | 57 | RKRRR |
2 | 108 | 114 | QRRRMRR |
3 | 109 | 116 | RRRMRRRK |
4 | 110 | 115 | RRMRRR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00554 | DAP | Transfer from AT5G49300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000232G0180 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP098913 | 0.0 | FP098913.1 Phyllostachys edulis cDNA clone: bphyst028n16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631979.1 | 3e-59 | GATA transcription factor 16 | ||||
TrEMBL | A0A0A9NUC3 | 1e-58 | A0A0A9NUC3_ARUDO; Uncharacterized protein | ||||
STRING | OGLUM03G39650.1 | 1e-58 | (Oryza glumipatula) | ||||
STRING | ORUFI03G41540.1 | 1e-58 | (Oryza rufipogon) | ||||
STRING | OS03T0831200-01 | 1e-58 | (Oryza sativa) | ||||
STRING | ONIVA03G41600.1 | 1e-58 | (Oryza nivara) | ||||
STRING | OBART03G39750.1 | 1e-58 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2418 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 7e-27 | GATA transcription factor 15 |