PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000229G0800
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARR-B
Protein Properties Length: 617aa    MW: 68925.6 Da    PI: 5.1992
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000229G0800genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.69.1e-26228281155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+gLt+e+v+SHLQkYRl
  PH01000229G0800 228 KARVVWSVDLHQKFVNAVNQI-GFDKVGPKKILDLMNVPGLTRENVASHLQKYRL 281
                      68*******************.9*******************************8 PP
2Response_reg56.51.6e-197815632109
                      HHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
     Response_reg  32 geealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                      ++ ale+l+e++  +D+++ D++mp+mdG++ll++i  e  +lp+i+++  ge + + + ++ Ga d+l Kp+ ++el++
  PH01000229G0800  78 ARVALEILRERKnkFDIVISDVNMPDMDGFKLLEHIGLEM-DLPVIMMSIDGETSRVMKGVQHGACDYLLKPVRMKELRN 156
                      56788999666667**********************6654.8***********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23008.4E-381237No hitNo description
SMARTSM004482.6E-1613158IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011033.21614162IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.55E-2316161No hitNo description
PIRSFPIRSF0363921.6E-14670611IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23008.4E-3871170No hitNo description
SuperFamilySSF521725.69E-2376169IPR011006CheY-like superfamily
PfamPF000722.1E-1679157IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS512949.161225284IPR017930Myb domain
SuperFamilySSF466893.58E-18225285IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-28227286IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-22228281IPR006447Myb domain, plants
PfamPF002499.8E-8230280IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MALADAIVFP YGLRVLVVDD DPTWLKILEK MLRKCSYEGW NLCFPLWLLS LIDGYGYAVI  60
YVGKFPAFWL HFTTCGLARV ALEILRERKN KFDIVISDVN MPDMDGFKLL EHIGLEMDLP  120
VIMMSIDGET SRVMKGVQHG ACDYLLKPVR MKELRNIWQH VYRKKMHEVK EIEGHDSCDD  180
LQLLRNGFEG LDEKSLFMRV DSDTMRKRKD VDKDHADQES SDGATVKKAR VVWSVDLHQK  240
FVNAVNQIGF DKVGPKKILD LMNVPGLTRE NVASHLQKYR LYLSRLQKQN EERILGAARQ  300
DFSHKGPSDS LNLRSSFQEQ PSKIASVYPH ASQNIQAQNS MLDSQLEDTK CAVPLPVSDK  360
NRTPVSDVVD SQNVAGASPL GGVLSFKGLP VNQDRKQSET MLLECQAWSG GFPSKQFMQY  420
PKHNHERCDL LGDYSCLPKP DLEHPIAPGH LFTPPPLISM SCSMEGGAKD FSDVKPALLD  480
CIKSLSPALT CTVDSVSVQL SHGVVTSTDG DLKFSSVEGL PSIKDSYFDQ TNSQDTLLPS  540
QEPSIIRGTD LSSLPEDLPG YPLQCVSFEN IGLSSIDLFH YNDTTILSGL GSNWYDDLEF  600
SSETTDYPLI DGCLFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A9e-18227286463ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000229G0800
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622017.10.0two-component response regulator ORR26 isoform X1
SwissprotQ5N6V80.0ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A0D9V9720.0A0A0D9V972_9ORYZ; Two-component response regulator
STRINGORUFI01G44260.20.0(Oryza rufipogon)
STRINGOS01T0904700-010.0(Oryza sativa)
STRINGONIVA01G45980.10.0(Oryza nivara)
STRINGORGLA01G0348700.10.0(Oryza glaberrima)
STRINGOBART01G40940.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59003752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-104response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]